rs250306268 SNP Detail

Summary

• ID
  rs250306268
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:96092391 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTTGGGCTA GGGAGAGGCT
  TGCTGGTACC CTGGGTACCT TGGGCATGTG GCTTTAAGTT TGTCTTTGAC CAGATGGAAT
  CTTGGCAAGA AAAAAAATAA TAAATATTGT TAATGTTCTC ATTTTTATTT AAAACGTTTT
  GTACCTGTGT TGAAAGCTAG ACAAGATCCA ACAAGGATAA TGATTTACTA GCAGACAGGA
  W
  ATTAACACAA TGCCAGGGCA GAGTGTCGCA GCTCCCCTCA GGGCCTCTGG CTCCCTTCCT
  CTCCTCAATG CCTTCTCAGA AGTTCCTGTG GTAGCTTCCG AGGAGACACT GGAAGGGGTC
  CCAACACAGC AGTGTTGAAC CCTTTCTGTA CAGGAGCATC ATGAAGCATC ATGGGATAGG
  TCACCTCCTG AGAGTACTAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss384364501	MGP_WTSI_11_96062879	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs250306268					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss384364501	MGP_WTSI_11_96062879	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:96092391 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3625	CpG island 3625	1693 bp proximal
Gm11538	predicted gene 11538	1889 bp upstream
Gm30134	predicted gene, 30134	within coordinates
Gm56412	predicted gene, 56412	1735 bp upstream
Gm56413	predicted gene, 56413	1254 bp upstream
Rr386513	regulatory region 386513	807 bp downstream
Rr455321	regulatory region 455321	86 bp distal
Rr455322	regulatory region 455322	81 bp proximal
Rr455323	regulatory region 455323	808 bp proximal
Rr455324	regulatory region 455324	1287 bp proximal
Rr455325	regulatory region 455325	1892 bp proximal
Tssr104437	transcription start site region 104437	1876 bp upstream