rs250309521 SNP Detail

Summary

• ID
  rs250309521
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:110677427 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TTGCCAAGT TCTCCAATGA ATTTGATGTT
  CCCCAACATC TTGATCTTAG CAATGGCTCT CTGTTCCTCC TCCTCAGGAA GGAGGGGATT
  TTCACGCTTA TCATAGACTG AGGGAAGGGA GGCAAACAAA ATAAAGAACA CTTAGGCCAT
  R
  AAAGGTGTGT ACGCACACAT AAAACTACCC AAGAGCAAAT TTAAATTCTT ACCATCAACA
  TTTCTGGTTC GGTTTTCAAA TTCATCTTGC AATTTGGAAA TCAAGAGGCG TCTGAATGTC
  TATTTGAAAA CAAAAAGTAT TTGTAAAAAG                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322401257	CHEV_7_118221734	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs250309521					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:110677427 () rs orientation: forward

Symbol	Name	Function Class
Eif4g2	eukaryotic translation initiation factor 4, gamma 2	within coordinates
Gm23262	predicted gene, 23262	1993 bp upstream
Rr159269	regulatory region 159269	1427 bp distal
Rr166519	regulatory region 166519	1573 bp proximal
Rr166520	regulatory region 166520	1973 bp proximal
Rr168547	regulatory region 168547	1827 bp distal
Tssr68538	transcription start site region 68538	1955 bp upstream
Tssr74289	transcription start site region 74289	1989 bp upstream
Tssr74290	transcription start site region 74290	1822 bp upstream
Tssr74291	transcription start site region 74291	81 bp upstream
Tssr74292	transcription start site region 74292	284 bp downstream
Tssr74293	transcription start site region 74293	336 bp downstream
Tssr74294	transcription start site region 74294	1096 bp downstream