rs250316119 SNP Detail

Summary

• ID
  rs250316119
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:48530756 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAACAACCC TCCAATTCAG
  CCTCTGCGCT CTAAGCGCAC GACCGGGCAT TTACAAAGGG CTTTGGGATC TTGACCCCCT
  TTTTCAGGCT TCTTTCAATA CACGAAGTAC TGGGGCGAGG GAAGGATTCC CTAGGTGCCG
  AAATCACCGC GATGCCAAAG CGCACCGTAC GCTGCGCTCC CGGTCCCAGG TACAGTCCCC
  W
  GCAGTAGCCC GCGTCCCGCC CGGCGCAAGC ACTGGCTCCT CCTCCCCGCC AACTGCACCG
  CCCCCGGGGG CAGCCAGACA GCATCTCACG GTTTCCAGGG CGACGGCTCC GAGCCAATCA
  GTAAGCCCGG TGAAGGCCTG CGATTGGCTA GAGGTCCCCA AGGCGGGGCC GGACCTTCCG
  CCTTCGATTT AAAAATTTGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss371266119	MGP_WTSI_7_56136378	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs250316119					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss371266119	MGP_WTSI_7_56136378	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:48530756 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi19137	CpG island 19137			within coordinates
E2f8	E2F transcription factor 8			Intron
				mRNA-UTR
Gm2788	predicted gene 2788			within coordinates
Rr400335	regulatory region 400335			within coordinates
Rr400336	regulatory region 400336			641 bp upstream
Rr646935	regulatory region 646935			1628 bp distal
Rr646936	regulatory region 646936			1121 bp distal
Rr646937	regulatory region 646937			within coordinates
Rr646938	regulatory region 646938			23 bp proximal
Rr646939	regulatory region 646939			377 bp proximal
Rr646940	regulatory region 646940			578 bp proximal
Tssr66768	transcription start site region 66768			324 bp upstream
Tssr66769	transcription start site region 66769			856 bp upstream
Tssr72630	transcription start site region 72630			18 bp upstream
Tssr72631	transcription start site region 72631			within coordinates
Tssr72632	transcription start site region 72632			24 bp downstream
Tssr72633	transcription start site region 72633			596 bp downstream
Tssr72634	transcription start site region 72634			633 bp downstream
Tssr72635	transcription start site region 72635			1343 bp downstream