rs250317306 SNP Detail

Summary

• ID
  rs250317306
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:148513219 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTGAGGCT GGAAGACACA
  AGTTTCTAAC CTGCATCTTG GCATGGAGAT TTTGGGGCAT AGTGGCCATG AAAAGTTTAG
  GCTAAACAAG GTAGTACACA CCTTTAATGC CAGGAGATTG AGGCAAGGAG AACCCTGACT
  AATATGGGGG TGGTGGAATG GTGGAGGAGG GGGAGGGGGA GGGGAGAGAA AGAGAGAGAG
  R
  GGGGAGGGGA AGGGGAGAGA AAGAGGGAGA GGGGGGAGGG GTGGAGGAGA GGAAGGGGAG
  AGGGAGAGAG AGAGAGAGAG AGAGAGAGAG AGAGAGAGAG AGATTCTATC CTCTAGAGAA
  CCTTGACGAA TACGCTCAAC TGTGTCAGTG GCCAGTCCTT TAGAATCAGA GGCATCTCTA
  ATCTCCCAAA TTCAAGGGCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	KK/HlJ	MA/MyJ	NON/ShiLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	SEA/GnJ	SJL/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356077470	MGP_WTSI_2_148497035	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	KK/HlJ	MA/MyJ	NON/ShiLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	SEA/GnJ	SJL/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs250317306					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356077470	MGP_WTSI_2_148497035	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:148513219 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12399	CpG island 12399	1082 bp proximal
Nxt1	NTF2-related export protein 1	1316 bp upstream
Rr397374	regulatory region 397374	1088 bp upstream
Rr566945	regulatory region 566945	812 bp proximal
Rr566946	regulatory region 566946	1186 bp proximal
Rr566947	regulatory region 566947	1338 bp proximal
Tssr20647	transcription start site region 20647	1335 bp upstream