rs250317751 SNP Detail

Summary

• ID
  rs250317751
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:80070718 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAGAAATTC TGTTTCAAAA
  AGATGGGAGA AGGACTGGAG AGATGACTCA AAGGTTGAGA GCACTGGCTG TTCTTCCAGA
  GGTCCTGAGT TCAATTCCCA GCAACCACAT GGTGACTCAC AACCATCTGT AATGGGATCC
  GGTGCCCTCT TCTGGCTTTC AGGCATATAT GCAGGCAGAA CACTACATAA TAAATAAATA
  A
  ATAAATCTTA TTTTAAAAAA TGGGAGCGAG ATGGAGAGAA ACCTTGAAGC TGGGTAAATG
  GCTCAATAGT TAAGAGCACT GGCTGCTCTT GCAGAGGACC TGTCACCCAT ACGACAGCTT
  ACAACTATTT GTAACTCTAG TTCCAGAGGA TCAGACACTC TCACAACAAT ACACAAAATA
  AAAATTTAAA AGACGCCACT                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss383995239	MGP_WTSI_11_79993394	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs250317751					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss383995239	MGP_WTSI_11_79993394	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:80070718 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Adap2	ArfGAP with dual PH domains 2			mRNA-UTR
				Noncoding-Transcript-Variant
D11Bhm113	DNA segment, Chr 11, Boehm 113			1095 bp proximal
Rr386348	regulatory region 386348			873 bp upstream
Rr452447	regulatory region 452447			1909 bp distal
Rr452448	regulatory region 452448			41 bp distal
Rr452449	regulatory region 452449			1671 bp proximal
Tssr103496	transcription start site region 103496			1949 bp downstream
Tssr103497	transcription start site region 103497			1899 bp downstream
Tssr103498	transcription start site region 103498			1847 bp downstream
Tssr103499	transcription start site region 103499			1665 bp downstream
Tssr103500	transcription start site region 103500			1608 bp downstream
Tssr103501	transcription start site region 103501			1325 bp downstream
Tssr103502	transcription start site region 103502			1227 bp downstream
Tssr103503	transcription start site region 103503			1168 bp downstream
Tssr103504	transcription start site region 103504			1131 bp downstream
Tssr103505	transcription start site region 103505			1034 bp downstream
Tssr103506	transcription start site region 103506			718 bp downstream
Tssr103507	transcription start site region 103507			557 bp downstream
Tssr103508	transcription start site region 103508			524 bp downstream