rs250333508 SNP Detail

Summary

• ID
  rs250333508
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:8061869 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGAAAAAGGG GATTGAAACT
  AGCCACAGCT GTCTCTCTAA CTAACAAATT TGTAAAGGGC AGTCATGACA GCACCATTAG
  TTTAACCAAG AAAAACATGG AAGCATCAGT GAGAACAACT GCCAACCTCC ATGCTCCCAT
  ATTCTCAATG AACTTCAAGC AGGAACTTAA TGGAAATACC AAGTCAAAAC CCACTGTTTC
  R
  TCATCCATTG AACTAAACTA TGACTTCAAT TCCTCAAAGC TGCACTCTAC TGCAACAGGA
  GGCATTGATC ACAAGTTCAG CTTAGAAAGT CTCACTTCCT ACTTTTCCAT TGAGTCATTC
  ACCAAAGGAA ATATCAAGAG TTCCTTCCTT TCTCAGGAAT ATTCAGGAAG TGTTGCCAAT
  GAAGCCAATG TATATCTGAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss385064725	MGP_WTSI_12_8018675	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs250333508					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss385064725	MGP_WTSI_12_8018675	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:8061869 () rs orientation: forward

Symbol	Name	Function Class
Apob	apolipoprotein B	within coordinates
Tssr112662	transcription start site region 112662	1808 bp downstream
Tssr112663	transcription start site region 112663	1567 bp downstream
Tssr112664	transcription start site region 112664	1543 bp downstream
Tssr112665	transcription start site region 112665	1388 bp downstream
Tssr112666	transcription start site region 112666	1368 bp downstream
Tssr112667	transcription start site region 112667	1319 bp downstream
Tssr112668	transcription start site region 112668	1183 bp downstream
Tssr112669	transcription start site region 112669	1096 bp downstream
Tssr112670	transcription start site region 112670	1040 bp downstream
Tssr112671	transcription start site region 112671	937 bp downstream
Tssr112672	transcription start site region 112672	355 bp downstream
Tssr112673	transcription start site region 112673	287 bp downstream
Tssr112674	transcription start site region 112674	212 bp downstream
Tssr112675	transcription start site region 112675	180 bp downstream
Tssr112676	transcription start site region 112676	84 bp downstream
Tssr112677	transcription start site region 112677	57 bp upstream
Tssr112678	transcription start site region 112678	181 bp upstream
Tssr112679	transcription start site region 112679	206 bp upstream
Tssr112680	transcription start site region 112680	225 bp upstream
Tssr112681	transcription start site region 112681	272 bp upstream
Tssr112682	transcription start site region 112682	285 bp upstream
Tssr112683	transcription start site region 112683	322 bp upstream
Tssr112684	transcription start site region 112684	366 bp upstream
Tssr112685	transcription start site region 112685	414 bp upstream
Tssr112686	transcription start site region 112686	462 bp upstream
Tssr112687	transcription start site region 112687	542 bp upstream
Tssr112688	transcription start site region 112688	643 bp upstream
Tssr112689	transcription start site region 112689	685 bp upstream
Tssr112690	transcription start site region 112690	710 bp upstream
Tssr112691	transcription start site region 112691	761 bp upstream
Tssr112692	transcription start site region 112692	797 bp upstream
Tssr112693	transcription start site region 112693	816 bp upstream
Tssr112694	transcription start site region 112694	954 bp upstream
Tssr112695	transcription start site region 112695	1173 bp upstream