rs250340103 SNP Detail

Summary

• ID
  rs250340103
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:16187896 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCGTG CTCTAGATTT TGAACGTCTG
  R
  GACAGAAGGG TAAAGGAATG GGACT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322110715	CHEV_7_17039320	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs250340103					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:16187896 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18377	CpG island 18377	434 bp distal
Cpgi18378	CpG island 18378	1038 bp proximal
Npas1	neuronal PAS domain protein 1	1747 bp downstream
Rr400123	regulatory region 400123	1053 bp downstream
Rr642666	regulatory region 642666	1551 bp distal
Rr642667	regulatory region 642667	1182 bp distal
Tmem160	transmembrane protein 160	within coordinates
Tssr64613	transcription start site region 64613	1003 bp downstream
Tssr64614	transcription start site region 64614	940 bp downstream