rs250349650 SNP Detail

Summary

• ID
  rs250349650
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:54799172 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTGGCACCT GCAGGAGAGT
  TCCTGGGCTG GGTGATGGCG CTGCCTCTAA TTCCAGGGGT CCCAAGGGAA CTGGCGAGCT
  GGCCAGGGCC TCCCCTGGGC TCCTGAATTC CCAGATGAGA GGGATGTGAA TACTGCCCTC
  CAATCACCCG AAGAAAGTCC TCAGCCACCT GCCCAGGGGC TAAGAGACCC AGGCAGCAGG
  Y
  GTGACTACCC ATATACAGAA GCATACTCCT GACTTCTCTC CCAAACCGCC ACTGCCCCCA
  GACTGGAGGC TCAGCCTTGC CACTGACTCT GTCACCCCGG GAAAGTCCTC CCTTCTTGGG
  CCTCACAGGT TCCAGCAGTC TGGAGGGTGT TGAGGCAGGT TCTTCACCTC TTCTCTTCTC
  TCTCCCTCGT CAAGAACTGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323674143	CHEV_11_54721848	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs250349650					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:54799172 () rs orientation: forward

Symbol	Name	Function Class
Gpx3	glutathione peroxidase 3	within coordinates
Tssr3502	transcription start site region 3502	1295 bp downstream
Tssr3503	transcription start site region 3503	1769 bp upstream
Tssr101553	transcription start site region 101553	1565 bp downstream
Tssr101554	transcription start site region 101554	1553 bp downstream
Tssr101555	transcription start site region 101555	1511 bp downstream
Tssr101556	transcription start site region 101556	1216 bp downstream
Tssr101557	transcription start site region 101557	1186 bp downstream
Tssr101558	transcription start site region 101558	1169 bp downstream
Tssr101559	transcription start site region 101559	1146 bp downstream
Tssr101560	transcription start site region 101560	1100 bp downstream
Tssr101561	transcription start site region 101561	189 bp upstream
Tssr101562	transcription start site region 101562	213 bp upstream
Tssr101563	transcription start site region 101563	263 bp upstream
Tssr101564	transcription start site region 101564	277 bp upstream
Tssr101565	transcription start site region 101565	706 bp upstream
Tssr101566	transcription start site region 101566	756 bp upstream
Tssr101567	transcription start site region 101567	1117 bp upstream
Tssr101568	transcription start site region 101568	1193 bp upstream
Tssr101569	transcription start site region 101569	1276 bp upstream
Tssr101570	transcription start site region 101570	1298 bp upstream
Tssr101571	transcription start site region 101571	1352 bp upstream
Tssr101572	transcription start site region 101572	1447 bp upstream
Tssr101573	transcription start site region 101573	1484 bp upstream
Tssr101574	transcription start site region 101574	1498 bp upstream
Tssr101575	transcription start site region 101575	1546 bp upstream
Tssr101576	transcription start site region 101576	1560 bp upstream
Tssr101577	transcription start site region 101577	1589 bp upstream
Tssr101578	transcription start site region 101578	1672 bp upstream
Tssr108006	transcription start site region 108006	1061 bp upstream
Tssr108007	transcription start site region 108007	218 bp downstream
Tssr108008	transcription start site region 108008	278 bp downstream
Tssr108009	transcription start site region 108009	294 bp downstream
Tssr108010	transcription start site region 108010	715 bp downstream
Tssr108011	transcription start site region 108011	1311 bp downstream
Tssr108012	transcription start site region 108012	1345 bp downstream
Tssr108013	transcription start site region 108013	1439 bp downstream
Tssr108014	transcription start site region 108014	1446 bp downstream
Tssr108015	transcription start site region 108015	1529 bp downstream
Tssr108016	transcription start site region 108016	1581 bp downstream
Tssr108017	transcription start site region 108017	1632 bp downstream
Tssr108018	transcription start site region 108018	1647 bp downstream
Tssr108019	transcription start site region 108019	1683 bp downstream
Tssr108020	transcription start site region 108020	1739 bp downstream
Tssr108021	transcription start site region 108021	1759 bp downstream
Tssr108022	transcription start site region 108022	1770 bp downstream