rs250354187 SNP Detail

Summary

• ID
  rs250354187
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:145744316 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CTGGGTCTA TGCCGTGGAG ACGCTGGGCT
  GGTGCTTAAA ATGTAGCAGG CCAGATGAAA GAATGTAATT CCTAATGGTT AACTTTCAAC
  TTAGACATGA GATAATGTTT CATTTGGTTA TTTGGAAACA TGTTTGGATT ACTTTGATAG
  Y
  TCTATCATCT TGTATGCATG TAtttgagac ggtcacacta tgtgtccttg actggcctgg
  aactcactat atagaccagg gttttcgagg ctcactaaca gcctcttgtc tctgtctcct
  tactactggg attacaggtg taaggcacta                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320538605	CHEV_2_145728132	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs250354187					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:145744316 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12364	CpG island 12364	634 bp proximal
Gm74898	predicted gene, 74898	within coordinates
Gm74902	predicted gene, 74902	1961 bp upstream
Naa20	N(alpha)-acetyltransferase 20, NatB catalytic subunit	within coordinates
Rr55740	regulatory region 55740	484 bp proximal
Rr63594	regulatory region 63594	1534 bp distal
Rr374012	regulatory region 374012	658 bp downstream
Rr397366	regulatory region 397366	636 bp upstream
Tssr20600	transcription start site region 20600	826 bp upstream
Tssr20601	transcription start site region 20601	838 bp upstream
Tssr20602	transcription start site region 20602	1494 bp upstream