rs250371094 SNP Detail

Summary

• ID
  rs250371094
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:18911440 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGGAGTGG AGAGGTAAAG
  AGACGCGGAG AGTGGACACT GGTCTCTAGG CCAGGAAAAC GTCCAGGAGG AAGCCAAGAG
  CTTGAGTCAT GGGGTGGGAC CATCAGGCCA AGCAAGGCCT CAGATGAAAG CTGACGACCG
  TTCAGGGTCA ATGTGCCCCC ATGTCAATCA GGGGGCCTTG CCAAAGGATC ATCTCAGAGT
  K
  TGGAGGTCAC TCCCTTGGGC ACACAAACAC TTTGCTAGGG ACCCCTAGAG TTGGCAAAGG
  AACTAGAATG TTATTTAATC CCCCATCTAC CTTCTAAAGG TTAAGGACCA CAGGGTGTCT
  CAGGCTAGGC CAAGTATGGG TTCTGGTCCT GAAAGAAAAG CTGTGTCCGA ATCAAGTGGC
  TGGGATCTTC TGGATGACAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss370743450	MGP_WTSI_7_19762864	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs250371094					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370743450	MGP_WTSI_7_19762864	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:18911440 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18450	CpG island 18450	705 bp distal
Cpgi18451	CpG island 18451	610 bp proximal
Cpgi18452	CpG island 18452	1442 bp proximal
Eml2	echinoderm microtubule associated protein like 2	within coordinates
Gm71808	predicted gene, 71808	904 bp upstream
Rr155272	regulatory region 155272	761 bp proximal
Rr167138	regulatory region 167138	within coordinates
Tssr64790	transcription start site region 64790	1075 bp downstream
Tssr64791	transcription start site region 64791	1041 bp downstream
Tssr64792	transcription start site region 64792	1003 bp downstream
Tssr64793	transcription start site region 64793	978 bp downstream
Tssr64794	transcription start site region 64794	822 bp downstream
Tssr64795	transcription start site region 64795	688 bp upstream
Tssr64796	transcription start site region 64796	1466 bp upstream