rs250379793 SNP Detail

Summary

• ID
  rs250379793
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:93032765 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAGCCTTGC AATGGCTACC
  AGCAAGCTCA GAGGGTGAAG ACTGTGTCTG TCTGGCCCCA TGAGGATGCT GAGAAGCTGG
  GTTGAATCAG GGCTACTTGG GAGCGCTTCA GCGTAAGTGT GGAAAGTTCT GGTGAGGGAC
  TCTGATCTGC CCTGGAATTG CCTAGGCTCC ATATCTGGCT TCTCAGTCCC TCCCTGTCCC
  W
  GCCCTGCCCA TCTCTGGAAG CCTGGGCTAG TTCTGGGTGG CAGCCGCTGT GGTTGGGCTA
  AGTCCTCAAC CTAGCCATGA ACTTCCAATC AATAGCCAAG CCATTTGCCT TCCTAGACAG
  TTGGAGTCCA GTACGTGCTG GGTTCTGAGT CAGCCTGGGT CCTCTTAGTC TGGGGGTGCA
  AGCCAGCAGA GGGGCCCCCT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss354849028	MGP_WTSI_2_93042577	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs250379793					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss354849028	MGP_WTSI_2_93042577	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:93032765 () rs orientation: forward

Symbol	Name	Function Class
Rr561119	regulatory region 561119	1138 bp distal
Rr561120	regulatory region 561120	within coordinates
Rr561121	regulatory region 561121	1510 bp proximal
Trp53i11	transformation related protein 53 inducible protein 11	661 bp downstream
Tspan18	tetraspanin 18	mRNA-UTR
Tssr18989	transcription start site region 18989	805 bp downstream
Tssr25280	transcription start site region 25280	869 bp downstream
Tssr25281	transcription start site region 25281	898 bp downstream
Tssr25282	transcription start site region 25282	917 bp downstream
Tssr25283	transcription start site region 25283	1019 bp downstream
Tssr25284	transcription start site region 25284	1234 bp downstream