rs250383053 SNP Detail

Summary

• ID
  rs250383053
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:74816524 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCCGTCAA TCCGAGCCCC
  AGATCAAAAG CAGTGTCCTC GGTGGTCACC GCAGCAATAC TGGCATCCCT AGACCCGAAT
  GCCCACCTGA CATGGGCGAG TCACACCTGG CTGCGCCTCA CCTCGCCTCC AGAGCGCTGC
  GCCTCCACCT CCGAGCCTCG GCGGACCGTC CTAGCTTTAC ACCTCTGCGC ACGCGCACAC
  R
  CCGTCTCCGC GGCCGATTCG CCCGCTCCGG CAAGGCCCTA GTTGAACGTG CTGAATGCTT
  TTGCTCCCAG TGCGGCCACC GTCGTTTGGG GAGGGCAGGC AGGAGGGGGG CGGGGAAAAG
  GGTGGGAGTG GGTGAGCGCG CGCCGCCCGT CCGTCGTGGT TTCCTGGCTG CGCGCGGCGG
  TGGCCGAGTC GCCGCAGCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss383890602	MGP_WTSI_11_74739200	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs250383053					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss383890602	MGP_WTSI_11_74739200	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:74816524 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3250	CpG island 3250	within coordinates
Gm72316	predicted gene, 72316	401 bp upstream
Rr451007	regulatory region 451007	1891 bp distal
Rr451008	regulatory region 451008	1225 bp distal
Rr451009	regulatory region 451009	1349 bp distal
Rr451010	regulatory region 451010	within coordinates
Rr451011	regulatory region 451011	65 bp proximal
Rr451012	regulatory region 451012	240 bp proximal
Rr451013	regulatory region 451013	310 bp proximal
Rr451014	regulatory region 451014	412 bp proximal
Smg6	SMG6 nonsense mediated mRNA decay factor	141 bp upstream
Srr	serine racemase	within coordinates
Tssr102917	transcription start site region 102917	118 bp upstream
Tssr102918	transcription start site region 102918	139 bp upstream
Tssr102919	transcription start site region 102919	180 bp upstream
Tssr102920	transcription start site region 102920	383 bp upstream
Tssr102921	transcription start site region 102921	1166 bp upstream
Tssr102922	transcription start site region 102922	1994 bp upstream
Tssr109155	transcription start site region 109155	within coordinates
Tssr109156	transcription start site region 109156	227 bp downstream
Tssr109157	transcription start site region 109157	1821 bp downstream