rs250386077 SNP Detail

Summary

• ID
  rs250386077
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:53189941 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCTCAGAAG GTTGGTTAAA
  AACAAGATAA AAACAATGAT CTGGGACTGT GAACCCAAAA ACAACAGAGC TTCTTCCAAA
  GTTTACCTAA AGGAATTCAG TAGATTAACA TCTTTTTTAA GACAAAGCTT TCTTTTCTGC
  GTAGCCCTGC CTATCCTGAA ATGGTCTCTA TGAACCAGGC TGGCCTCGAA CTCACTGCAG
  Y
  CTGCCTCTGC CTCCCTGCGA GAGCTGGGAT TAAAGGCCTG TGCCACCAGC GCCAGATAAA
  TAAAATTTTA ACGCACCTGT AATACCAGAT TCTAGCAGAC AGAAGCAGAA TGAAAATTTT
  AGGTCATCCT GGGCTAAATG TGGGGGAAAA AATCCTACAT ATATCTAAAA AGTAGACTCC
  CTTTTACTCC AGCAAGCTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss383395526	MGP_WTSI_11_53112616	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs250386077					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss383395526	MGP_WTSI_11_53112616	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:53189941 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi2859	CpG island 2859			479 bp proximal
Hspa4	heat shock protein 4			Intron
				Noncoding-Transcript-Variant
Rr369205	regulatory region 369205			1299 bp upstream
Rr446993	regulatory region 446993			234 bp proximal
Rr446994	regulatory region 446994			1333 bp proximal
Tssr101379	transcription start site region 101379			741 bp upstream
Tssr101380	transcription start site region 101380			770 bp upstream
Tssr101381	transcription start site region 101381			1692 bp upstream
Tssr107908	transcription start site region 107908			1063 bp downstream
Tssr107909	transcription start site region 107909			1073 bp downstream
Tssr107910	transcription start site region 107910			1085 bp downstream
Tssr107911	transcription start site region 107911			1218 bp downstream
Tssr107912	transcription start site region 107912			1259 bp downstream
Tssr107913	transcription start site region 107913			1416 bp downstream
Tssr107914	transcription start site region 107914			1572 bp downstream