rs250407279 SNP Detail

Summary

• ID
  rs250407279
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:29893248 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGATACAATC CTATAGAATT
  GCACCTTCCC CAAACACAGA AGAGCCCCTA TCCCCAAGAA ACTGCATCCT ATTTGTTGAC
  CCACAGAAGC AGGTTTACTA ATCCTGGTAC TAAAAAGTGA CACCAGCCTC GCTAGAATCC
  CCTTAGGGCC AGTTTTCCGG TATGGATCAG CCCAGACTAA TTAAGAATTC TCAGGTCGGA
  M
  TCTAAGTGAG TCTTTATTAT TTGGCCCGCC CCGCCCCTTC AGGCCCCGCC TTACCTGATG
  GCGCTAATGA CTCCGCCCAG GATGCGCATG GCAGTTCCAC CGCCTCCGCC ACCTCCTCCC
  AGTCCCATGC CTCCACCGCC ACCGCCGCCG CCGCCAGCAG CTCCGCTGAT CAGGCCTCCG
  AGCACATTCC CCAGGCCCCC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss370900988	MGP_WTSI_7_30978842	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs250407279					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370900988	MGP_WTSI_7_30978842	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:29893248 () rs orientation: forward

Symbol	Name	Function Class
Capns1	calpain, small subunit 1	within coordinates
Cpgi18781	CpG island 18781	794 bp distal
Cpgi18782	CpG island 18782	within coordinates
Cpgi18783	CpG island 18783	656 bp proximal
Gm26810	predicted gene, 26810	within coordinates
Rr400232	regulatory region 400232	within coordinates
Rr400233	regulatory region 400233	1212 bp upstream
Tssr65662	transcription start site region 65662	106 bp upstream
Tssr71696	transcription start site region 71696	893 bp upstream
Tssr71697	transcription start site region 71697	872 bp upstream
Tssr71698	transcription start site region 71698	841 bp upstream
Tssr71699	transcription start site region 71699	715 bp upstream
Tssr71700	transcription start site region 71700	680 bp upstream
Tssr71701	transcription start site region 71701	456 bp upstream
Tssr71702	transcription start site region 71702	4 bp upstream
Tssr71703	transcription start site region 71703	177 bp downstream
Tssr71704	transcription start site region 71704	271 bp downstream
Tssr71705	transcription start site region 71705	329 bp downstream
Tssr71706	transcription start site region 71706	1197 bp downstream
Tssr71707	transcription start site region 71707	1209 bp downstream
Tssr71708	transcription start site region 71708	1223 bp downstream
Tssr71709	transcription start site region 71709	1398 bp downstream
Tssr71710	transcription start site region 71710	1740 bp downstream