rs250407482 SNP Detail

Summary

• ID
  rs250407482
• Variation Type
  SNP
• Alleles
  A/C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:16591760 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTAACTTT CTCTCCTAAC
  ATACTTTAAA CCCCAATCAG ACTAGGGTTT GTTTGTTTGC TTGTTTGTTT GTTTGTTTTT
  TAAAGGAGTT TTTTTAAAGC TTGAATCTGT ACTTTCAACT GATCAACATA ACTAAGTCAG
  TACATGAAAT TACTTTTGTG TAGGGAGTGG AGGAAAACCA ATAACTGTGT GCAGCTGAAT
  H
  GACACAGCCA CACCAAGGAC CCCAGGCTCA GACCCATGGG AAACGGTGAC CCCCCTCCCC
  AAAGGATGAG GCTCAGAGAA ATGTCAAAGC CTTCCTCTGA TCCATGGGTA TATACTGATA
  GTGTATACGA AAAATGTCCA CCATTGTTCC CCCAAGTCCC CTCTCATATT TATGTCCTGA
  ACACTACTCA CCCCCATGCA                                            
  
  H = A/C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss348752924	MGP_WTSI_1_16511617	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	C	T	T	T	T	C	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	C	T	T	T	T	C	T	T	T	C	T	T	C	T	T	T	T	T	T	T	A	T	T	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs250407482					SNP	T	T	T	T	C	T	T	T	T	C	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	C	T	T	T	T	C	T	T	T	C	T	T	C	T	T	T	T	T	T	T	A	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss348752924	MGP_WTSI_1_16511617	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:16591760 () rs orientation: forward

Symbol	Name	Function Class
Cpgi55	CpG island 55	1344 bp distal
Rr28890	regulatory region 28890	959 bp distal
Stau2	staufen double-stranded RNA binding protein 2	1424 bp upstream
Tssr11040	transcription start site region 11040	1497 bp upstream
Tssr11041	transcription start site region 11041	1441 bp upstream
Tssr11042	transcription start site region 11042	1403 bp upstream