rs250408039 SNP Detail

Summary

• ID
  rs250408039
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:78458214 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGCTTCTTG CCGTTTTGAT
  GATATCAACT ACACTCGCCT TGTGTTGGGC ATTTGTGTTT ATAAGTGTTT GGTTGGGTGT
  TTGTGTTTGC AGGTGTTTTG TTGGGCATTT GTGTTTTTAG TTGTTTATTG GACTTTTGGG
  TTTCCTATTA CACAAGTTAC TATTTGTGTA TTTGTCCATT TCTCTACTGG AGTATTTTTT
  Y
  CCCTCATATT TATTTGGAGA AGTTCGGTGT TTGATTTTTC AAGTGTGAAT TGCTATAACC
  GTTTCATAGT TCATTTCCAG TATGTGGAAT TATTTTTTTT GAAGCTGTGA TATTTATAAA
  GGTTTATTTG TATGTGGTCA ACTTTAATTT TTCTTCCCTA ATGATTGATA CTCTTTGAGT
  GATTCTTTCT TAAGCATTCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss394657272	MGP_WTSI_15_78404444	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs250408039					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss394657272	MGP_WTSI_15_78404444	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:78458214 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7294	CpG island 7294	1981 bp distal
Gm36738	predicted gene, 36738	397 bp downstream
Rac2	Rac family small GTPase 2	1231 bp upstream
Rr307919	regulatory region 307919	787 bp proximal
Rr312023	regulatory region 312023	813 bp distal
Rr404481	regulatory region 404481	1060 bp downstream
Tssr135251	transcription start site region 135251	1339 bp upstream
Tssr135252	transcription start site region 135252	1324 bp upstream
Tssr135253	transcription start site region 135253	1264 bp upstream
Tssr135254	transcription start site region 135254	1224 bp upstream
Tssr135255	transcription start site region 135255	810 bp upstream
Tssr135256	transcription start site region 135256	785 bp upstream