rs250408776 SNP Detail

Summary

• ID
  rs250408776
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:113367503 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGCTCACAC TTGTAATTCT
  AGCTCTTGGA AATTGGAGAC AGGAGGACTT TTGAGTTCTA GGCCATACTG GAAGTACACT
  GTCTCAAAAT AAAGAGTATA TGTGAGAGAG GAAGGGTGCT TTTTGGATAG GCAACAGAAT
  ATTTGCTGGG GTTTGGGGAG TTTCCCTGTG TTGGGATTGA ACCCAGGGTC TTGAGCATAC
  Y
  GTGCAAACCT ACCACCAGGC TATATCACCA ACCGCCAGAA GGGTCTTTTG AAAAGATCAA
  GTAAAGGAAG GAGGGGTGGG GACTGCTTGA CTGGTTACCA TGCCTTTATG ACACTACCTC
  TGTGACCTGC CTTATTGAAT TAGTTTGGTC CTTTGCGGTA CCTGGCTTTC TTTATTCTAG
  TTTTGTAGTT ACTGTTAGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss369711453	MGP_WTSI_6_113340536	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs250408776					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369711453	MGP_WTSI_6_113340536	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:113367503 () rs orientation: forward

Symbol	Name	Function Class
Arpc4	actin related protein 2/3 complex, subunit 4	94 bp downstream
Cpgi17842	CpG island 17842	1625 bp proximal
Rr636505	regulatory region 636505	1498 bp proximal
Tssr58201	transcription start site region 58201	1556 bp downstream
Tssr58202	transcription start site region 58202	1483 bp downstream
Tssr58203	transcription start site region 58203	1429 bp downstream
Tssr58204	transcription start site region 58204	1322 bp downstream
Tssr58205	transcription start site region 58205	1283 bp downstream
Tssr58206	transcription start site region 58206	1261 bp downstream
Tssr58207	transcription start site region 58207	173 bp upstream
Tssr58208	transcription start site region 58208	1875 bp upstream
Tssr58209	transcription start site region 58209	1968 bp upstream
Ttll3	tubulin tyrosine ligase-like family, member 3	within coordinates