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rs250410440 SNP Detail
Summary
  • ID
    rs250410440
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr18:82600914 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                GCTTGTCTGC TTTTTTTGTT
    TGTTTTGCTT TGTTTTTTGT TTGTTTGTTT TTGTTTTTAA GCTCTTAGCA GCCGGCTCTG
    AGGGAAGGGC TCTGATTCGC TAGTTCAGTG TGGCAGTTAG CACCTGGGCT GGGGAGAATC
    AGTGGCTCTC TGTGTCTTTG GGACCCACAT CTTATTTCTA GGTGGATAAA AGGAGCCTTT
    R
    CCTCTTGTAG TGTCCCCATG AGGTTGTAGG GTCTCATGGG GACAAAGGTA TCCAGCAGAG
    AGTGCTCGCT TCACATCGCA GGTACACGTT TAAATCAACC TGTTCCTGGT GAGCGCAGGT
    TTACCAGTTA TGGGGCCTAA CGCCCACCAA AGACAGAGCA AGTGGCACGA GAGACAAAAG
    GCATGAAAGA AAATGGAAGC                                            
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss401436693 MGP_WTSI_18_82752181 EVA_MGPV3 EVA_MGPV3 f SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs250410440 SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss401436693 MGP_WTSI_18_82752181 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr18:82600914 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Mbp myelin basic protein Intron
Noncoding-Transcript-Variant
Rr541827 regulatory region 541827 876 bp proximal
Tssr152152 transcription start site region 152152 1319 bp upstream
Tssr152153 transcription start site region 152153 1347 bp upstream
Tssr152154 transcription start site region 152154 1461 bp upstream
Tssr152155 transcription start site region 152155 1499 bp upstream
Tssr152156 transcription start site region 152156 1572 bp upstream
Tssr152157 transcription start site region 152157 1623 bp upstream
Tssr152158 transcription start site region 152158 1680 bp upstream
Tssr152159 transcription start site region 152159 1710 bp upstream
Tssr152160 transcription start site region 152160 1760 bp upstream
Tssr152161 transcription start site region 152161 1777 bp upstream
Tssr152162 transcription start site region 152162 1793 bp upstream
Tssr152163 transcription start site region 152163 1818 bp upstream
Tssr152164 transcription start site region 152164 1858 bp upstream
Tssr152165 transcription start site region 152165 1911 bp upstream
Tssr152166 transcription start site region 152166 1977 bp upstream
Tssr152167 transcription start site region 152167 1992 bp upstream
Tssr154083 transcription start site region 154083 1428 bp downstream
Tssr154084 transcription start site region 154084 1452 bp downstream
Tssr154085 transcription start site region 154085 1724 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
07/22/2025
MGI 6.24
The Jackson Laboratory

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