rs250412671 SNP Detail

Summary

• ID
  rs250412671
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:115078993 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAAGCCCCT TCAGTCACTT
  GGAGTGTGAG CAGCATCCAG GCACCGAGAA GTGCCTTGCA TAGCAAATCA AGTTAGAAGA
  CATGGTCCAG GAAGCCGCGT CCCACCAAGG CTGTCTCATG GCAGATAGGG AGACCAAAGT
  GTCTGAGTTA AAAGGGCTAC AGGTGAAAGC GGCAGACTGC AAACCCCCCA CCCCCAGTCT
  Y
  ATCTCTGCAG TTAGAGAACT AAAGTCTACT CTTTTGTCTT AGGAGCTGCG GCTGCTGCTG
  CCACTGCATA GAAGTAACCT CTTGGGCCAG CCCTTCCTCA CTCTCTGGAG ATGGCAGGCG
  AGATCACAGA GACCGGAGAG CTCTATTCTC CTTATGTGAG TTCTTCTCCA TAAATGTGTT
  CTGCTCACCA CCATGCTCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss384823263	MGP_WTSI_11_115049481	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs250412671					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss384823263	MGP_WTSI_11_115049481	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:115078993 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4111	CpG island 4111	200 bp distal
Nat9	N-acetyltransferase 9 (GCN5-related, putative)	311 bp upstream
Rr403112	regulatory region 403112	664 bp downstream
Rr459794	regulatory region 459794	670 bp distal
Rr459795	regulatory region 459795	334 bp distal
Rr459796	regulatory region 459796	within coordinates
Rr459797	regulatory region 459797	422 bp proximal
Rr459798	regulatory region 459798	552 bp proximal
Rr459799	regulatory region 459799	1166 bp proximal
Tmem104	transmembrane protein 104	within coordinates
Tssr3728	transcription start site region 3728	596 bp downstream
Tssr3729	transcription start site region 3729	488 bp downstream
Tssr3730	transcription start site region 3730	1410 bp upstream
Tssr105849	transcription start site region 105849	605 bp downstream
Tssr111731	transcription start site region 111731	883 bp upstream
Tssr111732	transcription start site region 111732	849 bp upstream
Tssr111733	transcription start site region 111733	808 bp upstream
Tssr111734	transcription start site region 111734	331 bp upstream
Tssr111735	transcription start site region 111735	299 bp upstream
Tssr111736	transcription start site region 111736	597 bp downstream