rs250413200 SNP Detail

Summary

• ID
  rs250413200
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:18996492 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGTGGGGACA TGGCTCAGTG GTAGAGCACC TGAGTGGCTT
  GTCCAAAGCC ACCCCCCCAT TCAACCACCA GCACCTCTTA AAAAAAAAAA AAAAAAAAAG
  R
  CAGGATTTTG GCATCATTAG GGAATTTAAA ATAAAAGAAG ATTTGTTCCC TGCACTAGAG
  TTTCCACTTG ACCCAGATCA CCACATGGGC TGAATGTTT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322116772	CHEV_7_19847916	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs250413200					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:18996492 () rs orientation: forward

Symbol	Name	Function Class
Tssr70879	transcription start site region 70879	1865 bp upstream
Tssr70880	transcription start site region 70880	1624 bp upstream
Tssr70881	transcription start site region 70881	1560 bp upstream
Tssr70882	transcription start site region 70882	508 bp upstream
Tssr70883	transcription start site region 70883	1902 bp downstream
Vasp	vasodilator-stimulated phosphoprotein	within coordinates