rs250418568 SNP Detail

Summary

• ID
  rs250418568
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:69580754 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAATGAAGT GAAGTCCTCC
  ACATTAAAAA ATCAAGAGGA CGAAAAGACC AGATCCCCGG TGGAAAAAGA AAACCAAAAA
  TCAAAGGGTC AAGAAAATGA CCATGTACAT GACAAAAATA AAAAATGTGA TCATGAATCA
  AGCCCTGGAA CAGATGAAGA CAAAAGTGGA TGAGTGAGTT GTGTACTCTT AATTCCTTCC
  T
  GTCTCAAATT TTCAGTTTTT AAGACTTACT GTTGAACCTC CCTTTTTTAT TGTTTTCATT
  GTTTTGGAGT TGTTTATGTT TGTCTCCCCC CACCCCCTTT TTTTTTTTAA ATGTGGACTT
  CATTGAGTTG ATCTTTTGAT AATCTGCTAC CTGGATAATT TGTACTGCTA AAGTTTTAAT
  AAACTTGAAA TGAAAAGAAA                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss354377459	MGP_WTSI_2_69588467	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs250418568					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss354377459	MGP_WTSI_2_69588467	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:69580754 () rs orientation: forward

Symbol	Name	Function Class
Ppig	peptidyl-prolyl isomerase G (cyclophilin G)	within coordinates
Tssr18139	transcription start site region 18139	1440 bp downstream
Tssr18140	transcription start site region 18140	1411 bp downstream
Tssr18141	transcription start site region 18141	1392 bp downstream
Tssr18142	transcription start site region 18142	1373 bp downstream
Tssr18143	transcription start site region 18143	1333 bp downstream
Tssr18144	transcription start site region 18144	1137 bp downstream
Tssr18145	transcription start site region 18145	1006 bp downstream
Tssr18146	transcription start site region 18146	916 bp downstream
Tssr18147	transcription start site region 18147	860 bp downstream
Tssr18148	transcription start site region 18148	824 bp downstream
Tssr18149	transcription start site region 18149	805 bp downstream
Tssr18150	transcription start site region 18150	760 bp downstream
Tssr18151	transcription start site region 18151	737 bp downstream
Tssr18152	transcription start site region 18152	668 bp downstream
Tssr18153	transcription start site region 18153	586 bp downstream
Tssr18154	transcription start site region 18154	480 bp downstream
Tssr18155	transcription start site region 18155	459 bp downstream
Tssr18156	transcription start site region 18156	408 bp downstream
Tssr18157	transcription start site region 18157	103 bp upstream