rs250419079 SNP Detail

Summary

• ID
  rs250419079
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:42300098 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGTGGCTGC TGCCAGGGCA
  TGGGGAAAGC ACATTGTTTA AGGCATTTGT ATCTCACTGT GGAGCTAAGT CTCTGTGCAG
  CTGTGGGTCC TGGCTTGGAA GCTCCCTCAG AGATGAAGGA CACATAACAT ACTCTTCAGG
  ACCCTGGGAC CGTTATAACA TACAAGAGTG ACCATTCATG GTTTTCAGGG CTGTCTCAAA
  W
  TTTTAATATT TTGCTTTTAT TTTATACAGC TAGATATTTT TTCTTTCAAA ATTGCTTTTA
  ATTTTTTCTT TCAAGAAAAC AATTGAACAG CACCCAAACT CTAGGAACTG AATATCAAAA
  TGAAAGTATA GTATAATAAG TTTTTTTTTT TTTTTAAATG ATGCCTATTT ACTAACAAGT
  CCCACTCTCC CTATTCTGCC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss349397883	MGP_WTSI_1_42317783	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	A	A	T	T	T	T	T	T	T	T	T	T	T	A	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs250419079					SNP	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	A	A	T	T	T	T	T	T	T	T	T	T	T	A	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss349397883	MGP_WTSI_1_42317783	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:42300098 () rs orientation: forward

Symbol	Name	Function Class
Cpgi200	CpG island 200	1018 bp proximal
Gm28175	predicted gene 28175	within coordinates
Gm70195	predicted gene, 70195	1891 bp downstream
Rr410203	regulatory region 410203	1969 bp distal
Rr410204	regulatory region 410204	1123 bp distal
Rr410205	regulatory region 410205	14 bp distal
Rr410206	regulatory region 410206	735 bp proximal
Rr410207	regulatory region 410207	1001 bp proximal
Rr410208	regulatory region 410208	1764 bp proximal
Tssr6506	transcription start site region 6506	1128 bp downstream
Tssr6507	transcription start site region 6507	985 bp upstream