rs250423354 SNP Detail

Summary

• ID
  rs250423354
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:110425865 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAAGGACAC AGTCTTGTCC
  TGGGGAATTA GGGGAGACAG TTTTGCAGTC TCAGATGGTC TGGCAGTTAG TTAACAAACA
  TCTCTCATGG TCAGAGGAAG TTAGTGGAAA TGTAAAGTTA ATATCTTTTG CATGTGTGTA
  GCCGGCTCAT TCAGAGTTAA ACGATGCCAA ATGTTCATAG GAGTGTGTGT GTGTGTGTGT
  A
  TGGGGGGGGG AGGGAGGAGT TGGAAGGCAG GGAGCGGTGG GAAACTGTGG ATGGGCAAAG
  CTCCACACAC ACTCTCCATT TACTCTATAG CAATCCATAA AAGGAGGTTG GGCATTCTCC
  TATGGAAAGT TCAGAAGCAG ATGGAAATAT TTTATGATAT ATAATACTGT AACATGAATT
  TCCACTTTCT TCACAGGGGC                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	DBA/1J	DBA/2J	JF1/MsJ	KK/HlJ	LG/J	NZB/BlNJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SPRET/EiJ
ss384691424	MGP_WTSI_11_110396353	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	DBA/1J	DBA/2J	JF1/MsJ	KK/HlJ	LG/J	NZB/BlNJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SPRET/EiJ
rs250423354					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss384691424	MGP_WTSI_11_110396353	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:110425865 () rs orientation: forward

Symbol	Name	Function Class
Gm11682	predicted gene 11682	891 bp upstream
Gm30009	predicted gene, 30009	1651 bp upstream
Gm74395	predicted gene, 74395	within coordinates
Tssr105717	transcription start site region 105717	864 bp upstream
Tssr111604	transcription start site region 111604	1764 bp upstream