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rs250423626 SNP Detail
Summary
  • ID
    rs250423626
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr15:76133718 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
               TGCAGAGGGA GTCCCTCTCG CCCTCTTGTA TGTACACTGC AAATACTTAA
Y
GTCTGGACCC TCTATGGCCA CAGCATGGCC CCCTTTATCC CTTTTGCCCT           

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss394611522 MGP_WTSI_15_76079948 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C T T C C C C C C T C C C C C C T C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs250423626 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C T T C C C C C C T C C C C C C T C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss394611522 MGP_WTSI_15_76079948 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr15:76133718 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Cpgi7222 CpG island 7222 1808 bp distal
Grina glutamate receptor, ionotropic, N-methyl D-aspartate-associated protein 1 (glutamate binding) within coordinates
Mir6953 microRNA 6953 1260 bp downstream
Rr504689 regulatory region 504689 1803 bp distal
Rr504690 regulatory region 504690 469 bp proximal
Tssr131725 transcription start site region 131725 1977 bp downstream
Tssr131726 transcription start site region 131726 1909 bp downstream
Tssr131727 transcription start site region 131727 1842 bp downstream
Tssr131728 transcription start site region 131728 1823 bp downstream
Tssr131729 transcription start site region 131729 1682 bp downstream
Tssr131730 transcription start site region 131730 1662 bp downstream
Tssr131731 transcription start site region 131731 1595 bp downstream
Tssr131732 transcription start site region 131732 1565 bp downstream
Tssr131733 transcription start site region 131733 1529 bp downstream
Tssr131734 transcription start site region 131734 1500 bp downstream
Tssr131735 transcription start site region 131735 1446 bp downstream
Tssr131736 transcription start site region 131736 1376 bp downstream
Tssr131737 transcription start site region 131737 1220 bp downstream
Tssr131738 transcription start site region 131738 1046 bp downstream
Tssr131739 transcription start site region 131739 1020 bp downstream
Tssr131740 transcription start site region 131740 955 bp downstream
Tssr131741 transcription start site region 131741 894 bp downstream
Tssr131742 transcription start site region 131742 706 bp downstream
Tssr131743 transcription start site region 131743 676 bp downstream
Tssr131744 transcription start site region 131744 657 bp downstream
Tssr131745 transcription start site region 131745 530 bp downstream
Tssr131746 transcription start site region 131746 476 bp downstream
Tssr131747 transcription start site region 131747 428 bp downstream
Tssr131748 transcription start site region 131748 252 bp downstream
Tssr131749 transcription start site region 131749 176 bp downstream
Tssr131750 transcription start site region 131750 29 bp downstream
Tssr131751 transcription start site region 131751 28 bp upstream
Tssr134960 transcription start site region 134960 1857 bp upstream
Tssr134961 transcription start site region 134961 1470 bp upstream
Tssr134962 transcription start site region 134962 1345 bp upstream
Tssr134963 transcription start site region 134963 168 bp upstream
Tssr134964 transcription start site region 134964 137 bp upstream
Tssr134965 transcription start site region 134965 112 bp upstream
Tssr134966 transcription start site region 134966 within coordinates
Tssr134967 transcription start site region 134967 383 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory