rs250451047 SNP Detail

Summary

• ID
  rs250451047
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:78958243 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGAAAGAAAG AGACCCGGGC
  TGTGCAGTGA GGGTAAAGAG CCAAGTGTCC GCGCACAGGG CTGTCTCCTC CCAAGGAAGG
  GAGTTTCCTC TTCACCTAAA ATCGTGGTCT GCTCACCAAG CCAGATCCCA GCAGAAGGGC
  AGCTGGCGTG TCCCGGCTCC CCCCCCCCCC TTCAACTTTG TGGAAAAGTA GCAGAAGTCC
  T
  AGATTCTGAA GCCTAGGTTA GGTAAGTTTC ATTCTAAGAA ATCCCTTTAC AACCTAGATG
  GAAACTATTC AGGAAAAAAG AAAATGTAAA AACCCGAGCG ATTCTGAAGG TGAGCTGGCT
  GGCCCCCTGG AGCCTGGAAA TTCCCTAACT GCCCCAAACC ATCCCCAGGC CGAGACTCTT
  AATCCCAACT GAAGATCAGT                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324107224	CHEV_12_80012456	CHEVERUD	SCREENING_POP	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs250451047					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:78958243 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4797	CpG island 4797	484 bp proximal
Gm46359	predicted gene, 46359	within coordinates
Gm56547	predicted gene, 56547	within coordinates
Rr387474	regulatory region 387474	within coordinates
Tssr114072	transcription start site region 114072	461 bp upstream