rs250455027 SNP Detail

Summary

• ID
  rs250455027
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:57802249 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGATACGAG CTGAAGCCGG
  CAGAAGGACG CGCGGCAAGC CGGCGGAGCT CGAGGACGTG CCAGGCCGCC CTCGCCGCGC
  GCCCCCGATC CACCTCACGG GCGCGCGCTC GTGGGCTCGG AGCCTGCAAA GTCTGTGGAG
  CGCGCTGCGG GACGCGGAGA CAGCGGGGCT GGGTGAGAAG ACGGCCTGAT GTCTCCTCTC
  Y
  CGGAAGAGAC CATCTTGTCT CACCTTGATA GTTCTGGGAA GGTTTTTATA GGACACCGGG
  TTTGGGAGCT GGGGGATGGA TACGGATGGA CCCATCACTG GGTCTTCCTG AAGTTTCTAG
  CCACGGAGAC ATTCTCACTG AGGTTCCTGT AGGTAAGGTG GGAGGTCCAC TCCGCCCCAG
  GACAGTTAAA ACCACAAGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss368438990	MGP_WTSI_6_57775258	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs250455027					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss368438990	MGP_WTSI_6_57775258	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:57802249 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17487	CpG island 17487	within coordinates
Rr399671	regulatory region 399671	1988 bp downstream
Rr631165	regulatory region 631165	1904 bp distal
Rr631166	regulatory region 631166	1508 bp distal
Rr631167	regulatory region 631167	139 bp distal
Rr631168	regulatory region 631168	774 bp distal
Rr631169	regulatory region 631169	within coordinates
Tssr56734	transcription start site region 56734	1541 bp downstream
Tssr56735	transcription start site region 56735	766 bp downstream
Tssr56736	transcription start site region 56736	707 bp downstream
Tssr56737	transcription start site region 56737	615 bp downstream
Tssr61164	transcription start site region 61164	601 bp upstream
Tssr61165	transcription start site region 61165	123 bp upstream
Tssr61166	transcription start site region 61166	98 bp upstream
Tssr61167	transcription start site region 61167	18 bp downstream
Vopp1	vesicular, overexpressed in cancer, prosurvival protein 1	139 bp upstream