rs250459855 SNP Detail

Summary

• ID
  rs250459855
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:74702062 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CTTTATTGT CTGGAAAGTT ACTAGCGATT
  TACTGATTAG ACTCTAAGCC TGGCCCTGAA AGTTATCAAA TGTTCTCAGG GAGTGAAGAA
  GTGGGAAGAT ATTCAAGTTA CAAAGTAGCT TTAGAAAGAT ACAGCATGGC CTGAACAGAG
  S
  TCCGAGCTCA GTTGTGTTTG TTGGGAGCCA TTCTGTGAGC TGGGCTTATT AGGGCCCAAG
  ACTTAACTTA AAATGAATCT ATTTCCTGAC TTGTAGTTTC CAAGTGACTT TAGTTTTTTT
  GTTTGTTTGT ttttgttttt gagacagggt                                 
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319795111	CHEV_1_74709477	CHEVERUD	SCREENING_POP	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs250459855					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:74702062 () rs orientation: forward

Symbol	Name	Function Class
Cpgi388	CpG island 388	697 bp distal
Gm70804	predicted gene, 70804	1490 bp upstream
Rr371526	regulatory region 371526	within coordinates
Rr413230	regulatory region 413230	1509 bp distal
Rr413231	regulatory region 413231	1148 bp distal
Rr413232	regulatory region 413232	8 bp distal
Rr413233	regulatory region 413233	1084 bp distal
Tssr7442	transcription start site region 7442	1335 bp downstream
Tssr7443	transcription start site region 7443	1247 bp downstream
Tssr7444	transcription start site region 7444	1190 bp downstream
Tssr7445	transcription start site region 7445	1114 bp downstream
Tssr7446	transcription start site region 7446	1071 bp downstream
Tssr7447	transcription start site region 7447	787 bp downstream
Ttll4	tubulin tyrosine ligase-like family, member 4	within coordinates