rs250463712 SNP Detail

Summary

• ID
  rs250463712
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:50594033 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGCGTGGTG GTGCACACCT
  TTAATACCAG CACTTGGGAG GCAGAGGCAG GCGGATTTCT GAGTTCAAGG CCAGCCTGAT
  CTACAGAGTG AGTTCCAGGA CAGCCAGAGT TACACACAGA GAAACCCTGT CTCAGAAAAA
  AAAAAAAAAA AAGTAAAACT GTATTTTTTT ACTATATACA TATATATGTA GTTTTACAAT
  W
  TATATATATA GTTTATGTAC ATGTATATAT ACACACATAT ATGTATATAC ATGTATGTAT
  GTATATATAT GTATATATAT ATATATATAT ATATATATAT ATATATATAT ATATATATAT
  ATATGGAGAG AGATACATTG GGTTGTACTG AGAATAAATA ATACTTAACA AATATATCAA
  ATTTACTATA ATAGTCAATA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CZECHII/EiJ	DBA/1J	I/LnJ	LP/J	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ
ss353933622	MGP_WTSI_2_50559541	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	A	T	A	A	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CZECHII/EiJ	DBA/1J	I/LnJ	LP/J	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ
rs250463712					SNP	T	T	T	T	T	T	T	A	T	A	A	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss353933622	MGP_WTSI_2_50559541	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:50594033 () rs orientation: forward

Symbol	Name	Function Class
Rr556762	regulatory region 556762	637 bp distal
Rr556763	regulatory region 556763	323 bp proximal