rs250470806 SNP Detail

Summary

• ID
  rs250470806
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:59738785 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    cagccaggg ttacaatgag aaaccctgtc
  ttgaagaaGG AAAGtattta tttatttatt tatttattta tttaGAGATA CTGAAAATGT
  TCTGCAATGT AAAGATAACA CCCTGAGGTA TGCAATTGTA GGGCTACAGA TGTCATTAAT
  R
  CCACGATTTG CTAGCTCACA TGAAGCCTTC TCTATAATTT TCTGTATCCC GATATTATAC
  AAAGGCTGTG GTATTTCTTA CTTTGGAGTG TATTAAAGAC CTACTGTGTA AAAGCAACAA
  AACTgggctg gagagatggc tcagtggtta                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319739036	CHEV_1_59756470	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs250470806					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:59738785 () rs orientation: forward

Symbol	Name	Function Class
Nop58	NOP58 ribonucleoprotein	within coordinates
Rr371359	regulatory region 371359	202 bp downstream
Rr411703	regulatory region 411703	1512 bp distal
Tssr6887	transcription start site region 6887	1551 bp downstream
Tssr11836	transcription start site region 11836	1847 bp upstream