rs250475971 SNP Detail

Summary

• ID
  rs250475971
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:130039797 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    gggtggaca cctgtgctct gaccaggaag
  gtggccggtt gtctTCAACC TATATTTATG ATTATTTGCT TCCTATGTTC CAGACATGCT
  TCTAAGGATA GGAAATAAAA GGGTGAACAA GCAATATCTG TTTCCTCAGT GAAAAGTAGA
  C
  CTGCCACATA AACAGCCAGA TGTAAACACA TAAGTTAACA TATAATGAGA TGACTTCTCT
  TTAAATGCCA AGAATAAAAC CTAAGTGGGT TTGGAGTTGC AGGGACCCTG TTTTAGAGAA
  GCTGGTCAAC AGAGTGGAAT TCAGGCAGGA                                 
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319970932	CHEV_1_132008637	CHEVERUD	SCREENING_POP	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs250475971					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:130039797 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr417893	regulatory region 417893			603 bp proximal
Thsd7b	thrombospondin, type I, domain containing 7B			Intron
				Noncoding-Transcript-Variant