rs250480460 SNP Detail

Summary

• ID
  rs250480460
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:63217887 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGTCTCCAA AACAACCAAA
  CCACACAGAG AAATGACAAC GACAACCAAA CAGCTTTGAA GAATTATATA TATAACTTTT
  CCTTTGATAG ATCCTGCTCT TGGACACTGG TAACTTTGGC AGCAGAACGG AAAGGGATTG
  TGTCCCATTT TATAGGTGGA GGGATGGAAA GGGGGCAGTT AAAATCTGCT CGCTTCCCAC
  Y
  GGATTTCAGG CCAGAATGGA TCAGCAAGGT CCTGAGAACT CAGTGGTGGG GACCAAGTCG
  GATTCAGACT AATATCACAG AACGTTGGAC ATGGCTCAGA TTGTAAGAGT GCTTGCAAGC
  AAGGTTGACC ATCTAGTGTG ATCCACCTGA AGGTTGCCAC AACACACTAA AAAACCCAAA
  CAAACAAAAA ACAAAAAAAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323333512	CHEV_10_62844856	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs250480460					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:63217887 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1649	CpG island 1649	253 bp distal
Cpgi1650	CpG island 1650	224 bp proximal
Dnajc12	DnaJ heat shock protein family (Hsp40) member C12	335 bp upstream
Gm66647	predicted gene, 66647	within coordinates
Rr215754	regulatory region 215754	714 bp proximal
Rr224928	regulatory region 224928	within coordinates
Rr369009	regulatory region 369009	within coordinates
Tssr97916	transcription start site region 97916	636 bp downstream