rs250481735 SNP Detail

Summary

• ID
  rs250481735
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:126293271 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACATGGCTG CTCTGGTAAG
  GAATCACATC CAAAGGCCCA GGTCTATATG ATGGGGCTGG AATGCCAACA CGGCCTGGAC
  TACAGTATGA TTTGCTGGAA CGCAGACACG CCCTTTCATC CCTACAGTGA AGGTAAGGTG
  AGTTTGTAGA CGCAGCCATG TTTGAAAATG ACATCTAATT AAAGGGCAGA TGTCCAACCT
  R
  CATGAAAACA ACACAGGAAA GAGAAGCTAC TTAAGAGCAG AGAGAGGGGG CTGGTGAGAT
  GGCTCAGTGG GTAAGAGCAC CCGACTGCTC TTCCAGAGGT CCTGAGTTCA AATCCCAGAA
  ACCACATGGT GGCTCACAAC CATCTGTAAT GGGATCTGAT GCCCTCTTCT GGTGTGTCTG
  AAGATACAAC AGTGTACTCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss373073463	MGP_WTSI_7_133837613	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs250481735					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss373073463	MGP_WTSI_7_133837613	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:126293271 () rs orientation: forward

Symbol	Name	Function Class
Bola2	bolA family member 2	1901 bp upstream
Cpgi19704	CpG island 19704	1311 bp distal
Cpgi19705	CpG island 19705	1240 bp proximal
Rr368435	regulatory region 368435	1557 bp upstream
Rr400629	regulatory region 400629	417 bp downstream
Rr400630	regulatory region 400630	1134 bp upstream
Rr655564	regulatory region 655564	339 bp distal
Rr655565	regulatory region 655565	648 bp distal
Rr655566	regulatory region 655566	472 bp distal
Rr655567	regulatory region 655567	827 bp proximal
Rr655568	regulatory region 655568	847 bp proximal
Rr655569	regulatory region 655569	1155 bp proximal
Rr655570	regulatory region 655570	1659 bp proximal
Rr655571	regulatory region 655571	1675 bp proximal
Rr655572	regulatory region 655572	1866 bp proximal
Slx1b	SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)	within coordinates
Tssr69055	transcription start site region 69055	1256 bp upstream
Tssr69056	transcription start site region 69056	1843 bp upstream
Tssr74794	transcription start site region 74794	1615 bp downstream
Tssr74795	transcription start site region 74795	1632 bp downstream