rs250488738 SNP Detail

Summary

• ID
  rs250488738
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:27857058 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACTTAGCTC TGCCATGAGG
  GTTTAAGAGA GACAGTGCTC TTTGCCTTCC TTAAATGGAT GTTCTCTGAC CCCCCCCCAA
  CTTAATTGAC CTTTGCATCC AGGTGACCGT GGACAGTGAA GTGGTGGCAC TACCCATGGT
  TGTAGGATCC ATATATATAA CCGCTGAAAA CCGAAACGTA TTTCTGCAGA CAAAAAGTGG
  R
  CTAAAACTTC TTTTTGATGG CGATGACCAT ATCCTTATAT CCATCCCGAG TCCCTTCCGT
  GGGCGTCTCT GTGGCCTCTG TGGGAATTTC AATGGGAACC AGAGTGACGA CTTTGTGCTG
  CCCAGCGGAG TGGTGGCCCC CAACGTGGAG GCCTTTGGAG CTGCATGGCG AGCTCCCGGC
  TCCTCCTTGG GCTGTGGTGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss370854490	MGP_WTSI_7_28942652	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs250488738					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370854490	MGP_WTSI_7_28942652	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:27857058 () rs orientation: forward

Symbol	Name	Function Class
Fcgbpl1	Fc fragment of IgG binding protein like 1	within coordinates
Rr170292	regulatory region 170292	1058 bp distal
Rr170293	regulatory region 170293	1519 bp proximal
Tssr2161	transcription start site region 2161	607 bp downstream
Tssr65423	transcription start site region 65423	904 bp downstream
Tssr65424	transcription start site region 65424	899 bp downstream
Tssr65425	transcription start site region 65425	559 bp downstream
Tssr65426	transcription start site region 65426	98 bp downstream
Tssr65427	transcription start site region 65427	69 bp downstream
Tssr65428	transcription start site region 65428	52 bp downstream
Tssr65429	transcription start site region 65429	39 bp downstream
Tssr65430	transcription start site region 65430	within coordinates
Tssr65431	transcription start site region 65431	13 bp upstream
Tssr65432	transcription start site region 65432	31 bp upstream
Tssr65433	transcription start site region 65433	148 bp upstream
Tssr65434	transcription start site region 65434	208 bp upstream
Tssr65435	transcription start site region 65435	355 bp upstream
Tssr65436	transcription start site region 65436	1793 bp upstream
Tssr65437	transcription start site region 65437	1847 bp upstream