rs250508168 SNP Detail

Summary

• ID
  rs250508168
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:91178033 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TCAGGCCGT GCTCTTCACC AATGAACGAG
  GGCCGACTAG TTGACCTGTG TATGTCCTGT GACTGTCCAC GAGTGGAGCT GCCAATAAAG
  TTCTTTTGTA GCTTTGAATT TTTTTTTTAA AGTGCCCACT GCGGTCACGG CGCAGTCCCC
  S
  CCCCGCCACT TCCGGTCTCG CCGCCGGGAG CCGGTGCGGC TGTGAAGGCC AGCGCGACTC
  AGTGCCGCTG CTCCGCCGGG CATGGTTTTG GGTGCCGGCT CGCCTCGCCT GACTCGCGGT
  GCTCAGGTAA GCTGGTCGCG CGGGCTGGAC                                 
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319839834	CHEV_1_93146888	CHEVERUD	SCREENING_POP	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs250508168					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:91178033 () rs orientation: forward

Symbol	Name	Function Class
Cpgi571	CpG island 571	within coordinates
Rr366958	regulatory region 366958	65 bp downstream
Rr415586	regulatory region 415586	975 bp distal
Rr415587	regulatory region 415587	within coordinates
Rr415588	regulatory region 415588	266 bp proximal
Rr415589	regulatory region 415589	1552 bp proximal
Tssr8065	transcription start site region 8065	95 bp downstream
Tssr8066	transcription start site region 8066	1 bp downstream
Tssr8067	transcription start site region 8067	within coordinates
Tssr8068	transcription start site region 8068	171 bp upstream
Tssr8069	transcription start site region 8069	264 bp upstream
Tssr12938	transcription start site region 12938	236 bp upstream
Tssr12939	transcription start site region 12939	1061 bp downstream
Ube2f	ubiquitin-conjugating enzyme E2F (putative)	within coordinates