rs250511007 SNP Detail

Summary

• ID
  rs250511007
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:25594135 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCTGGGGG AGAGCAAGAC
  CCGGAGCTGA GGAAGGCTCA TACTTCACCG AGAGCCTCCT TACTGCTGCC TCCGGGAGTA
  GACGATAATT TCTGCACGGA AACCCCTTCT AGCATCCTGG TTTCCCCGGC TTCTCAGATA
  ACCCCTTCAC GTCCTCTAAC AAACACCTCA GAGCAGGGCT TCAACTCAAC TTGTCTGTCT
  R
  TCTGTCTGTC TCAAAAAATA CATATACCAG ACATGACACC ATTTTAACCA ATTTAATGTG
  CACCCGTGGT AACATCCAAC GTACTGTTCA TCTGTGGCCA CTGTATAGTT CCAGACAATT
  TCCATCCTCT CTCTTTTCTT TCAGCCTTAA GTAATCACTA ATTTGCTCTC CACCCAGTCT
  ACATATTTGG GACATTTCAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss373995093	MGP_WTSI_8_26214591	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs250511007					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss373995093	MGP_WTSI_8_26214591	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:25594135 () rs orientation: forward

Symbol	Name	Function Class
5830408C22Rik	RIKEN cDNA 5830408C22 gene	within coordinates
Cpgi20179	CpG island 20179	947 bp distal
Gm45745	predicted gene 45745	within coordinates
Gm63713	predicted gene, 63713	within coordinates
Plekha2	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 2	1743 bp upstream
Rr368503	regulatory region 368503	800 bp downstream
Tssr76671	transcription start site region 76671	630 bp downstream
Tssr80680	transcription start site region 80680	1950 bp upstream
Tssr80681	transcription start site region 80681	1925 bp upstream
Tssr80682	transcription start site region 80682	1731 bp upstream
Tssr80683	transcription start site region 80683	1549 bp upstream
Tssr80684	transcription start site region 80684	1089 bp upstream
Tssr80685	transcription start site region 80685	542 bp downstream
Tssr80686	transcription start site region 80686	581 bp downstream
Tssr80687	transcription start site region 80687	672 bp downstream