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rs250514451 SNP Detail
Summary
  • ID
    rs250514451
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    ChrX:9302573 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                AATAAAGACA AGGAAAACCC
CAGAAAACTG GAGAAGGATT CTTGTAGCAA CAAACAGACT CATTACCACT TTTGTTAGAA
CACGGTGTTT TCAGAGTCCT TGTAACTGAG ATCAAACTTT GCCACAAATA GTTAAAATTG
ACTCATTAAT TATACCAAAC AAATGTATGT TGAATGAATG ACCTAATGCC TAGGGTGCAA
Y
ACGAAGGTCT GTCTGGACCT TTGTCCCAGG GCAACAATTC TCCTGGTACC ATGTGCACAT
CTAGGAAGGC CTTATTTACC AGAACCAGCC TTGAGTGCTC TAAGGATGCT AAGCGAACAA
GAGCATAGCA GGAACATAAG GAGAATCTGA GCTCTCCCTT CGTCTAGTCC CTTCAAAATC
TTCATACAAT AGCAAAATTT                                            

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss403025248 MGP_WTSI_X_9013460 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs250514451 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss403025248 MGP_WTSI_X_9013460 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: ChrX:9302573 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Cybb cytochrome b-245, beta polypeptide within coordinates
Tssr160517 transcription start site region 160517 835 bp downstream
Tssr160518 transcription start site region 160518 333 bp downstream
Tssr160519 transcription start site region 160519 296 bp upstream
Tssr160520 transcription start site region 160520 320 bp upstream
Tssr160521 transcription start site region 160521 407 bp upstream
Tssr160522 transcription start site region 160522 538 bp upstream
Tssr162873 transcription start site region 162873 686 bp upstream
Tssr162874 transcription start site region 162874 430 bp upstream
Tssr162875 transcription start site region 162875 407 bp upstream
Tssr162876 transcription start site region 162876 251 bp upstream
Tssr162877 transcription start site region 162877 232 bp upstream
Tssr162878 transcription start site region 162878 180 bp upstream
Tssr162879 transcription start site region 162879 74 bp upstream
Tssr162880 transcription start site region 162880 within coordinates
Tssr162881 transcription start site region 162881 16 bp downstream
Tssr162882 transcription start site region 162882 327 bp downstream
Tssr162883 transcription start site region 162883 707 bp downstream
Tssr162884 transcription start site region 162884 749 bp downstream
Tssr162885 transcription start site region 162885 793 bp downstream
Tssr162886 transcription start site region 162886 840 bp downstream
Tssr162887 transcription start site region 162887 867 bp downstream
Tssr162888 transcription start site region 162888 920 bp downstream
Tssr162889 transcription start site region 162889 950 bp downstream
Tssr162890 transcription start site region 162890 1010 bp downstream
Tssr162891 transcription start site region 162891 1044 bp downstream
Tssr162892 transcription start site region 162892 1097 bp downstream
Tssr162893 transcription start site region 162893 1201 bp downstream
Tssr162894 transcription start site region 162894 1231 bp downstream
Tssr162895 transcription start site region 162895 1291 bp downstream
Tssr162896 transcription start site region 162896 1317 bp downstream
Tssr162897 transcription start site region 162897 1344 bp downstream
Tssr162898 transcription start site region 162898 1368 bp downstream
Tssr162899 transcription start site region 162899 1514 bp downstream
Tssr162900 transcription start site region 162900 1524 bp downstream
Tssr162901 transcription start site region 162901 1555 bp downstream
Tssr162902 transcription start site region 162902 1637 bp downstream
Tssr162903 transcription start site region 162903 1698 bp downstream
Tssr162904 transcription start site region 162904 1799 bp downstream
Tssr162905 transcription start site region 162905 1883 bp downstream
Tssr162906 transcription start site region 162906 1887 bp downstream
Tssr162907 transcription start site region 162907 1960 bp downstream
Tssr162908 transcription start site region 162908 1984 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory