rs250521982 SNP Detail

Summary

• ID
  rs250521982
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:152336357 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    agggggctg tcaccctgga cagtggtcct
  gagttgttta agagagcagc tgagcaagcc agaagcaact cagtaagccg tgttcctcca
  aggtctcttc ttcagttgcc tgcaggttcc tgacctgact ttcctcaatg atgaagtgtc
  R
  cctgagtatt acaagctgaa ataagtcctt tcctccccaa gttgctctta gtcatggcat
  ttactataac aatagaaacT AAGACAGTGG CCTTCAAAAC CCAAACTCTG ATCTTAAAAA
  AAAATAATAA TCAGTAAAGC TCAATCATAG                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320065951	CHEV_1_154307736	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs250521982					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:152336357 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Colgalt2	collagen beta(1-O)galactosyltransferase 2			Intron
				Noncoding-Transcript-Variant
Rr420464	regulatory region 420464			1278 bp distal
Rr420465	regulatory region 420465			1173 bp proximal
Rr420466	regulatory region 420466			1821 bp proximal