rs250524338 SNP Detail

Summary

• ID
  rs250524338
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:75235844 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTCTATGT GCGTATTTGT
  CTGCTGTTGA AGATTTTGTG TCACAATTTT TTTCTAGCTT TATTTTTGCC TTTACTTGAA
  AGGCGATTTT TACCTGGAAT AAAGTTGTTG GCTGCATGTT ACAGATGACC TTCACGGTGC
  TAGATACTTG AAGGCAACAG TGTGTCTGCC TAGACTGGTC TTCTATTGCC AGTGGGGTTT
  K
  GCTCTTTGTT GGTGGTGGTT GTTACAGGCT TTAATTTTCA TGCTCTTCCC CCGTTCACAG
  ACGGTGGCCC TCGGGAAACC CTGATGCACT TTGCTGTGCG GCTGGGACTG CTGCGGTTGA
  CATGGTTCCT GTTACAGAAG CCAGGTGGCC GTGGAGCTCT CAGCATCCAC AACAAGGAAG
  GGGCAACGCC TGTGAGCCTG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss371935117	MGP_WTSI_7_82730982	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs250524338					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss371935117	MGP_WTSI_7_82730982	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:75235844 () rs orientation: forward

Symbol	Name	Function Class
Akap13	A kinase anchor protein 13	within coordinates
Rr400375	regulatory region 400375	1881 bp upstream
Rr649259	regulatory region 649259	381 bp distal
Rr649260	regulatory region 649260	1029 bp proximal
Tssr67241	transcription start site region 67241	382 bp downstream
Tssr67242	transcription start site region 67242	83 bp upstream
Tssr67243	transcription start site region 67243	107 bp upstream
Tssr67244	transcription start site region 67244	128 bp upstream
Tssr67245	transcription start site region 67245	165 bp upstream
Tssr67246	transcription start site region 67246	183 bp upstream
Tssr67247	transcription start site region 67247	211 bp upstream
Tssr67248	transcription start site region 67248	267 bp upstream
Tssr67249	transcription start site region 67249	290 bp upstream
Tssr67250	transcription start site region 67250	323 bp upstream
Tssr73048	transcription start site region 73048	1792 bp downstream