rs250538973 SNP Detail

Summary

• ID
  rs250538973
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:141547757 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATAGTTGGG ATCTTAAGTA
  CGCACAACCA CACCTGGCTT CTTTCACCGG TTCTGAGGAC ATGTGTCCCC ATGCTTGCAA
  GGTAAGCTGT TTACCAACTG AGTTCCTCAA CATCCCCACC TCATTATCAT TCCTTAATCA
  CAGTGTATCA TGCTCTATAA ACGGGCCAGT CCTCACAGTG ATATTCATTC CTGTTTGGCG
  R
  AGGGGACATG GACGACTGCT CTAATTATAC TTGCTTAACG CTTTCCCGGG TCCAAAGCAC
  TTCAGATATA TCTGTGACCA TCACCACAGA CCTTATACTT TACAAATGAG GAGATAGGCG
  TTACAGAGGG CCCAGCATGA GCAAAGTGTG TATATCCAAG GAGCCTGGGC TACCTCCCTG
  CCTCTCTCTC CCAAATTCCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321390092	CHEV_4_141376361	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs250538973					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141547757 () rs orientation: forward

Symbol	Name	Function Class
Cela2a	chymotrypsin-like elastase family, member 2A	within coordinates
Cpgi15246	CpG island 15246	1369 bp distal
D4Mit32	DNA segment, Chr 4, Massachusetts Institute of Technology 32	447 bp distal
Gm56298	predicted gene, 56298	within coordinates
Tssr40108	transcription start site region 40108	1402 bp downstream
Tssr40109	transcription start site region 40109	1367 bp downstream
Tssr40110	transcription start site region 40110	1344 bp downstream
Tssr40111	transcription start site region 40111	879 bp upstream
Tssr40112	transcription start site region 40112	907 bp upstream
Tssr40113	transcription start site region 40113	936 bp upstream
Tssr40114	transcription start site region 40114	1258 bp upstream
Tssr40115	transcription start site region 40115	1292 bp upstream
Tssr40116	transcription start site region 40116	1332 bp upstream
Tssr44374	transcription start site region 44374	1314 bp upstream
Tssr44375	transcription start site region 44375	1081 bp upstream
Tssr44376	transcription start site region 44376	1063 bp upstream
Tssr44377	transcription start site region 44377	454 bp upstream
Tssr44378	transcription start site region 44378	333 bp upstream
Tssr44379	transcription start site region 44379	906 bp downstream
Tssr44380	transcription start site region 44380	918 bp downstream
Tssr44381	transcription start site region 44381	1274 bp downstream
Tssr44382	transcription start site region 44382	1293 bp downstream
Tssr44383	transcription start site region 44383	1344 bp downstream
Tssr44384	transcription start site region 44384	1811 bp downstream
Tssr44385	transcription start site region 44385	1817 bp downstream
Tssr44386	transcription start site region 44386	1827 bp downstream