rs250541266 SNP Detail

Summary

• ID
  rs250541266
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:26727461 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCCCCCGGC GTCCAGGATG
  CCCACCTCCA TCACCATGGC CAGCCCCAGC GACCCCAGCG TGCCCGTTCT GCGGTTCTCC
  AGAAAAAGTC GGTCGATCTT GTGCGGTGTC CTGTGGCCCT AAGTCCCCAA GTGCTCGCTG
  CTCCTAATCT GGCTTCACCG CGCTTTCCTC CCGCCAGTCC TTCACTGCGC GCTCGTCCGA
  M
  GGAGCGCGGT TTTATGTAGC CTCTCGGGGG CGGTCCCGGG CGCGGCACAG AAGCGGGGGG
  TGGGGTGGGG GTGGGGGAGA ACGGTTTGTT TGTTTGAATG GCAGACACGT GACCGGGCGG
  TGACGTCACC CGCCCTACCG AGCTTGGCGC CGCCAAAGCC AAAAGCAAAG ACGTCATCGG
  CCTAGGAGCC TCTCGGCTCT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss397901212	MGP_WTSI_17_26645432	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs250541266					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss397901212	MGP_WTSI_17_26645432	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:26727461 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8810	CpG island 8810	1137 bp distal
Cpgi8811	CpG island 8811	within coordinates
Dusp1	dual specificity phosphatase 1	15 bp upstream
Gm56886	predicted gene, 56886	49 bp upstream
Rr339410	regulatory region 339410	within coordinates
Rr405112	regulatory region 405112	within coordinates
Rr405113	regulatory region 405113	317 bp upstream
Rr406958	regulatory region 406958	365 bp proximal
Tssr5044	transcription start site region 5044	464 bp upstream
Tssr5045	transcription start site region 5045	976 bp downstream
Tssr5046	transcription start site region 5046	1029 bp downstream
Tssr5047	transcription start site region 5047	1038 bp downstream
Tssr143231	transcription start site region 143231	986 bp downstream
Tssr143232	transcription start site region 143232	161 bp upstream
Tssr143233	transcription start site region 143233	210 bp upstream
Tssr143234	transcription start site region 143234	262 bp upstream
Tssr143235	transcription start site region 143235	1214 bp upstream
Tssr143236	transcription start site region 143236	1239 bp upstream
Tssr146946	transcription start site region 146946	1971 bp upstream
Tssr146947	transcription start site region 146947	1950 bp upstream
Tssr146948	transcription start site region 146948	1924 bp upstream
Tssr146949	transcription start site region 146949	1856 bp upstream
Tssr146950	transcription start site region 146950	1315 bp upstream
Tssr146951	transcription start site region 146951	828 bp upstream
Tssr146952	transcription start site region 146952	280 bp upstream
Tssr146953	transcription start site region 146953	240 bp upstream
Tssr146954	transcription start site region 146954	5 bp upstream
Tssr146955	transcription start site region 146955	377 bp downstream
Tssr146956	transcription start site region 146956	1007 bp downstream
Tssr146957	transcription start site region 146957	1072 bp downstream