rs250544925 SNP Detail

Summary

• ID
  rs250544925
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:58894829 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCTCCTGAA GACCTGGTCC
  AAATGAGGGG CCAGCCTCAG AAAACTCATG AAGGCCTGAC CCAGGTGAGG GGCAAGCATC
  AGGTACCTCC TGAAGGCCTG ACCCGGGTTG GGGGCCAGCT TCAGGTACCT CCTGAAGGTC
  TGACCCAGGT GAGGGGCCAG CCTCAGGTAC CTCCTGAAGG CCTGGCCCAG GTGAGGGGCC
  G
  CCTCAGGTAC CTCTTGAAGG CCTGGCCCAG GTGAGGAGCC AGCCTCAGGT ACCTCCTGAA
  GGCCTGACCC GGGTAAGGGG CCAGCCTCAG GTACCTCCTA AAGGCCTGAT CCGGGTAAGG
  GGCCAGCCTC AGGTACCTCC TGAAGGCCTG ACCCAGGTGA GGGGCCAGCC TCAGGTACCT
  CCTGAAGGCC TGGCCCAGGT                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	ZALENDE/EiJ
ss383534512	MGP_WTSI_11_58817505	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	ZALENDE/EiJ
rs250544925					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss383534512	MGP_WTSI_11_58817505	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:58894829 () rs orientation: forward

Symbol	Name	Function Class
Gm10435	predicted gene 10435	within coordinates
Obscn	obscurin, cytoskeletal calmodulin and titin-interacting RhoGEF	within coordinates
Rr448071	regulatory region 448071	1083 bp distal
Tssr101782	transcription start site region 101782	1053 bp downstream
Tssr101783	transcription start site region 101783	1034 bp downstream
Tssr101784	transcription start site region 101784	1022 bp downstream
Tssr108189	transcription start site region 108189	1810 bp upstream
Tssr108190	transcription start site region 108190	1772 bp upstream
Tssr108191	transcription start site region 108191	1637 bp upstream
Tssr108192	transcription start site region 108192	1618 bp upstream
Tssr108193	transcription start site region 108193	1602 bp upstream
Tssr108194	transcription start site region 108194	1554 bp upstream