rs250546129 SNP Detail

Summary

• ID
  rs250546129
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:82224064 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACTCT GAGGCCACCA GGCATTCACA
  Y
  GGTGCACATA CAGGCAGATA ATCGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325034252	CHEV_15_82170293	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs250546129					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:82224064 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7419	CpG island 7419	532 bp distal
Cpgi7420	CpG island 7420	878 bp proximal
Naga	N-acetyl galactosaminidase, alpha	1081 bp upstream
Pheta2	PH domain containing endocytic trafficking adaptor 2	within coordinates
Rr506479	regulatory region 506479	894 bp distal
Rr506480	regulatory region 506480	496 bp distal
Rr506481	regulatory region 506481	738 bp distal
Rr506482	regulatory region 506482	505 bp proximal
Rr506483	regulatory region 506483	1327 bp proximal
Tssr4669	transcription start site region 4669	988 bp upstream
Tssr132381	transcription start site region 132381	1336 bp upstream
Tssr135543	transcription start site region 135543	1072 bp upstream
Tssr135544	transcription start site region 135544	1009 bp upstream
Tssr135545	transcription start site region 135545	999 bp upstream