rs250548252 SNP Detail

Summary

• ID
  rs250548252
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:70093883 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCCCGAAAC TCCACCTTCC
  GGGCGCGCGG CGCGGAGCCG GGCGGTGGGA ATGGAGCGAG CAGATTGAGG CCGCCACTGC
  AGCGCCGCCA GCATGAACTT GGCCGCGAGC TGAAGCGACG GGCGGCGGGC GGGCGCGGGG
  GCACCGGCCG CTAGCCAGGG GGTGATCTTC AATCCGGCTG GGCCATTAGG CGGGCGCCTG
  K
  GTAGGCTGCC CGTGCCGGCG GCCGCCCGCC CCTCTGGCTC TGCCCTGGCT GCTGCTGGAG
  CTCCGCAACA CGGTAAGGGT GAAGGCGGGT GCGGGAAGTC CGACTGCTCC AGTGGGGGGA
  CTCTAGGGTG CACTTATAGT CCTCAATTAT AGTCTCCATC TTTTAGGATC CGGGGCCCTG
  GGATGCTATG AAATGGGAGA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss403736579	MGP_WTSI_X_68303452	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs250548252					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss403736579	MGP_WTSI_X_68303452	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:70093883 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22753	CpG island 22753	within coordinates
Gm61915	predicted gene, 61915	303 bp upstream
Gm61918	predicted gene, 61918	424 bp downstream
Mamld1	mastermind-like domain containing 1	within coordinates
Rr691735	regulatory region 691735	314 bp distal
Rr691736	regulatory region 691736	11 bp distal
Rr691737	regulatory region 691737	174 bp distal
Tssr161155	transcription start site region 161155	152 bp downstream
Tssr161156	transcription start site region 161156	133 bp downstream
Tssr161157	transcription start site region 161157	106 bp downstream