rs250569909 SNP Detail

Summary

• ID
  rs250569909
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:126576270 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTCCCATC CCATCCCAAG
  GTTATGCCCG GATTGTCTTC GCCATCATTT CCTTCTACTT TATGCCCTGC TGCCCCTTCA
  CGGCCTCCTC CTTCTATCTA CTCAGCGGAC TCCTAGACGC TTTCGATGGA CACGCAGCTC
  GAGCCCTTAA TCAAGGTGAC AGAACTTTAC CACCACCAGC ACTAACTGGG GTCCCAACAT
  Y
  CTCTGTCCTT TCCCTGCTTT CTCAGAACCT CGTTGAGAGC TGCCTAGGAT ATAAGCTTGC
  TCTTGATGAT TGATCTCTGT TTGGGATGGG TGTGGAAGAC CTAGACCCTG CATAGCTGTG
  AGCATGGAAT TCCATTCGGG TGTGGCATAA TGGCTCATGC TTGTAATGCC AGCACTGATA
  AGGTAGGTAG ATTGCTCCAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss373078387	MGP_WTSI_7_134120612	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs250569909					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss373078387	MGP_WTSI_7_134120612	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:126576270 () rs orientation: forward

Symbol	Name	Function Class
Cdipt	CDP-diacylglycerol--inositol 3-phosphatidyltransferase	Intron
Cdiptos	CDIP transferase, opposite strand	695 bp upstream
Cpgi19724	CpG island 19724	54 bp distal
Rr368439	regulatory region 368439	789 bp downstream
Rr655656	regulatory region 655656	1321 bp distal
Rr655657	regulatory region 655657	235 bp distal
Tssr2401	transcription start site region 2401	500 bp downstream
Tssr69141	transcription start site region 69141	1474 bp downstream
Tssr69142	transcription start site region 69142	801 bp downstream
Tssr69143	transcription start site region 69143	698 bp downstream
Tssr69144	transcription start site region 69144	676 bp downstream
Tssr69145	transcription start site region 69145	632 bp downstream
Tssr69146	transcription start site region 69146	554 bp downstream
Tssr69147	transcription start site region 69147	521 bp downstream
Tssr69148	transcription start site region 69148	479 bp downstream
Tssr69149	transcription start site region 69149	1935 bp upstream
Tssr74865	transcription start site region 74865	1682 bp upstream
Tssr74866	transcription start site region 74866	1255 bp upstream
Tssr74867	transcription start site region 74867	1251 bp upstream
Tssr74868	transcription start site region 74868	993 bp upstream
Tssr74869	transcription start site region 74869	967 bp upstream
Tssr74870	transcription start site region 74870	956 bp upstream