rs250571361 SNP Detail

Summary

• ID
  rs250571361
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:39676449 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAAACCTCA GTGTGTCTCT
  GAACCCCTGT AGGTCATGTT AAAATATGAC TGTTTCACGA AGAAGCTGGT GTGGGATAGG
  GCTTGAGAAT TCACACTTGG AATAAATCCC CAGTGATGGC ATGGTTAGTC AAGGGACCTC
  TCCTCTGTAA AATAAATAAA TAAATAAACA AACAAACAAA CAAACAGGAA AAAATGAACA
  K
  AGCAAACAAA AATCTTAAAT TGTAAATTTT GGTGTCTCGT TCAAGCCATT GGGAAAACAA
  GCAAGCAAAC AAACAAAAGG CCTTTCCCTA AAATACTTAA TCTCCAACTC TCACTGCCAT
  GTGACCATTT CTTAGAGGGA GTGGTCTGTG TTTGCTGGGC TTTCTCCAAA GCCTCTTGTA
  GGCAGCCATG ACTCATCCTG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss393725959	MGP_WTSI_15_39644599	EVA_MGPV3	EVA_MGPV3	f	SNP	G	T	T	T	T	T	T	T	G	T	T	T	T	T	T	T	G	T	T	G	T	T	T	T	G	T	G	G	T	T	T	T	T	T	G	G	T	T	T	T	T	T	T	G	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs250571361					SNP	G	T	T	T	T	T	T	T	G	T	T	T	T	T	T	T	G	T	T	G	T	T	T	T	G	T	G	G	T	T	T	T	T	T	G	G	T	T	T	T	T	T	T	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss393725959	MGP_WTSI_15_39644599	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:39676449 () rs orientation: forward

Symbol	Name	Function Class
Dpys	dihydropyrimidinase	within coordinates
Gm16291	predicted gene 16291	676 bp downstream
Gm62327	predicted gene, 62327	331 bp upstream
Rr302762	regulatory region 302762	1352 bp proximal
Rr309646	regulatory region 309646	1141 bp distal