rs250574140 SNP Detail

Summary

• ID
  rs250574140
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:56811616 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAATTACTT TCATAATTGC
  TGAGGAGGAA AATCTTCAAT GTGGTATATT ACTAACCCTC TGTCTTTTTT TAATCAGAAA
  ATGACAACTC CCTCCTCAAA TTATGGTAAT GTATTACAGT ACGTTTTACA ATTAAGGTGC
  GGTGGTGACT TGAATAGACT CATGTATTTG AATGCTTGGC CCATAGGAAG TGGCACTATT
  R
  GGAGGTGTAG CCTTGTTGGA CAGGGTATGT CATTGTGGAG GAAGGCTTTG AGCTCTCATA
  TAAATGCTTG AGCTACACCC AGTGTGAGAC ATATTCGGTC TCCTCCTTGC TGCCTTCCAA
  TCAAGAGGTA GAGCTCTCTG CTCTTTGTCT CTAACCCTAA CCCTCAACCC CCTGCACACT
  GCTGTGCGTC CCAGCGTGAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325859400	CHEV_19_56897674	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs250574140					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:56811616 () rs orientation: forward

Symbol	Name	Function Class
1700010L13Rik	RIKEN cDNA 1700010L13 gene	642 bp downstream
Ccdc186	coiled-coil domain containing 186	994 bp upstream
Cpgi11092	CpG island 11092	559 bp distal
Rr406045	regulatory region 406045	766 bp downstream
Rr550140	regulatory region 550140	1268 bp distal
Rr550141	regulatory region 550141	1005 bp distal
Rr550142	regulatory region 550142	504 bp distal
Tssr157215	transcription start site region 157215	1220 bp downstream
Tssr159886	transcription start site region 159886	1097 bp upstream
Tssr159887	transcription start site region 159887	964 bp upstream