rs250575681 SNP Detail

Summary

• ID
  rs250575681
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:49024836 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTATTTTCTT TTCTTCTTGT
  GTTGTATCTT CTAGATCAGA TCCCTGTATT CGTGACCATG TCCCAGAAGA ATGACAGGAA
  CTTGTCTGAT GAGATCTTCC TCAGAGACCT CCCCATCGTC TTCGATGTCC TCATTCATGA
  TCCCAGCCAC TTCCTCAACG ACTCTGCCAT TTCCTACAAG TGGAACTTTG GGGACAACAC
  Y
  GGCCTGTTTG TCTCCAACAA TCACACTTTG AATCACACTT ATGTGCTCAA TGGAACCTTC
  AACCTTAACC TCACCGTGCA AACTGCAGTG CCCGGGCCAT GCCCTCCCCC TTCGCCTTCG
  ACTCCGCCTC CACCTTCAAC TCCGCCCTCA CCTCCGCCCT CACCTCTGCC CACATTATCA
  ACACCTAGCC CCTCTTTAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss368235226	MGP_WTSI_6_48997901	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	C	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs250575681					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	C	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss368235226	MGP_WTSI_6_48997901	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:49024836 () rs orientation: forward

Symbol	Name	Function Class
D6Dcr8	DNA Segment, Chr 6, Derry C. Roopenian 8	1452 bp distal
D6Mit142	DNA segment, Chr 6, Massachusetts Institute of Technology 142	1464 bp distal
Gm56981	predicted gene, 56981	within coordinates
Gpnmb	glycoprotein (transmembrane) nmb	within coordinates
Tssr56330	transcription start site region 56330	1897 bp downstream
Tssr56331	transcription start site region 56331	1852 bp downstream
Tssr56332	transcription start site region 56332	1779 bp downstream
Tssr56333	transcription start site region 56333	1741 bp downstream
Tssr56334	transcription start site region 56334	1731 bp downstream
Tssr56335	transcription start site region 56335	1711 bp downstream
Tssr56336	transcription start site region 56336	1684 bp downstream
Tssr56337	transcription start site region 56337	1661 bp downstream
Tssr56338	transcription start site region 56338	1645 bp downstream
Tssr56339	transcription start site region 56339	1631 bp downstream
Tssr56340	transcription start site region 56340	1441 bp downstream
Tssr56341	transcription start site region 56341	1181 bp downstream
Tssr56342	transcription start site region 56342	1149 bp downstream
Tssr56343	transcription start site region 56343	603 bp downstream
Tssr56344	transcription start site region 56344	579 bp downstream
Tssr56345	transcription start site region 56345	560 bp downstream
Tssr56346	transcription start site region 56346	507 bp downstream
Tssr56347	transcription start site region 56347	489 bp downstream
Tssr56348	transcription start site region 56348	466 bp downstream
Tssr56349	transcription start site region 56349	145 bp downstream
Tssr56350	transcription start site region 56350	116 bp downstream
Tssr56351	transcription start site region 56351	89 bp downstream
Tssr56352	transcription start site region 56352	70 bp downstream
Tssr56353	transcription start site region 56353	2 bp downstream
Tssr56354	transcription start site region 56354	within coordinates
Tssr56355	transcription start site region 56355	25 bp upstream
Tssr56356	transcription start site region 56356	43 bp upstream
Tssr56357	transcription start site region 56357	55 bp upstream
Tssr56358	transcription start site region 56358	73 bp upstream
Tssr56359	transcription start site region 56359	88 bp upstream
Tssr56360	transcription start site region 56360	125 bp upstream
Tssr56361	transcription start site region 56361	1980 bp upstream
Tssr60848	transcription start site region 60848	1494 bp upstream
Tssr60849	transcription start site region 60849	540 bp upstream
Tssr60850	transcription start site region 60850	487 bp upstream
Tssr60851	transcription start site region 60851	25 bp upstream
Tssr60852	transcription start site region 60852	within coordinates
Tssr60853	transcription start site region 60853	5 bp downstream
Tssr60854	transcription start site region 60854	24 bp downstream
Tssr60855	transcription start site region 60855	57 bp downstream
Tssr60856	transcription start site region 60856	95 bp downstream
Tssr60857	transcription start site region 60857	124 bp downstream