rs250578560 SNP Detail

Summary

• ID
  rs250578560
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:77544139 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ACCAGCGGG CTCTCACTTC ACACCACCGG
  GAGAGAGAAG CTGGGACCGC AACTACCAAC TCGTGCCGAC TGGATCCTAG GGTGTGTATG
  GCTGTGTGGG TGGGAGACAG TGGGGGTGTC TGAGTGTTGG TGGCAGTAGA GCTATTTTCC
  Y
  ACAGGGTATC TCCAGCTGGG TGCTACAGGT CATGTCCCTT GATCTGAAGT TGGGAGACAG
  AAAACTTTGT CCTGGAATTT GAGAAATGTT GTAACCAAGG AAACAGACAC AGTAACTGAT
  ATGTATGAGT GATACGCTAT AAAAGTAAAA                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323013587	CHEV_9_77484664	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs250578560					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:77544139 () rs orientation: forward

Symbol	Name	Function Class
Gm68532	predicted gene, 68532	30 bp upstream
Klhl31	kelch-like 31	within coordinates
Rr683389	regulatory region 683389	347 bp distal
Rr683390	regulatory region 683390	41 bp distal
Rr683391	regulatory region 683391	within coordinates
Rr683392	regulatory region 683392	557 bp proximal
Tssr86194	transcription start site region 86194	377 bp downstream
Tssr86195	transcription start site region 86195	329 bp downstream
Tssr86196	transcription start site region 86196	310 bp downstream
Tssr86197	transcription start site region 86197	247 bp downstream
Tssr86198	transcription start site region 86198	237 bp downstream
Tssr86199	transcription start site region 86199	222 bp downstream
Tssr86200	transcription start site region 86200	146 bp downstream
Tssr86201	transcription start site region 86201	125 bp downstream