rs250588478 SNP Detail

Summary

• ID
  rs250588478
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr18:35252933 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTCCCGAGG GCGGGTATCG
  CTGGCATTCG ATGTCAATGA CCTGCCTTTC GACTTTAAAA GGAACTTGTT AATGTGCGTG
  TAGAACTTGG GGGCGGGGAT GTTGTTGACT GGATTCGTAA CCTTGGTTTT CAAGCAGTGG
  CCACCCCAAT AATCCAGTGA GCGGTTGGCT CAAGTCAAGG ATTGATATCC TCTCATGTTC
  Y
  GTGCCTTCAT AACACTTGGT TTGATTTTAG ATGTGAGTGT GTATGGAATT TACAATAATT
  TATGATGTAA ATATATGCTT TATCATTGTA TCTTTCAGGG GTTTTAATAA GGATATTTTG
  TGTTTAGCGT TGAGTTTTAA AGACTACAGG TGGATGTTAC CTTAAGAAAT GGAATTTGTT
  TTGTTTTACT AAAGGATTGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325583041	CHEV_18_35279534	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs250588478					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:35252933 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9834	CpG island 9834	121 bp distal
Ctnna1	catenin alpha 1	Intron
Gm46617	predicted gene, 46617	1041 bp upstream
Rr535795	regulatory region 535795	1325 bp distal
Rr535796	regulatory region 535796	1011 bp distal
Rr535797	regulatory region 535797	within coordinates
Tssr150509	transcription start site region 150509	977 bp downstream
Tssr150510	transcription start site region 150510	954 bp downstream
Tssr150511	transcription start site region 150511	927 bp downstream
Tssr150512	transcription start site region 150512	451 bp downstream
Tssr150513	transcription start site region 150513	62 bp downstream
Tssr150514	transcription start site region 150514	40 bp downstream
Tssr150515	transcription start site region 150515	352 bp upstream
Tssr152859	transcription start site region 152859	1062 bp upstream