rs250590332 SNP Detail

Summary

• ID
  rs250590332
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:128583331 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    tagtcctgg ctgtcctgga actcactctg
  tagaccagac tggcctcgaa ctcagaaatc ctcctccctc tgcctccact gggattaaag
  gcgtgcgcca ccactgctcg gttGTTTTGT TTTAAAGTAG AACATATTGT CTACTACTGA
  M
  GTACTAATAT TTCCCCACTT CTCAATTTGA GAGGCACTGT TGGACGTTAG TGTAAGCCAA
  AGTTGGGCAA TAGAAGAGGG TGAAAGAGTT AAGGAAAAAG CTTTGTAGGA GGAGGGCAGA
  CACCTGAGGA GAGGAGCTTG AGCCAGCACC                                 
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323535821	CHEV_10_128184518	CHEVERUD	SCREENING_POP	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs250590332					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:128583331 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2419	CpG island 2419	240 bp proximal
Gm31504	predicted gene, 31504	1580 bp downstream
Gm66065	predicted gene, 66065	1113 bp upstream
Pym1	PYM homolog 1, exon junction complex associated factor	427 bp upstream
Rr224483	regulatory region 224483	1130 bp distal
Rr224484	regulatory region 224484	within coordinates
Rr385481	regulatory region 385481	within coordinates
Tssr96443	transcription start site region 96443	988 bp downstream
Tssr96444	transcription start site region 96444	326 bp upstream
Tssr96445	transcription start site region 96445	388 bp upstream
Tssr96446	transcription start site region 96446	1039 bp upstream
Tssr96447	transcription start site region 96447	1289 bp upstream
Tssr99954	transcription start site region 99954	1996 bp upstream
Tssr99955	transcription start site region 99955	1963 bp upstream
Tssr99956	transcription start site region 99956	1210 bp upstream
Tssr99957	transcription start site region 99957	1150 bp upstream
Tssr99958	transcription start site region 99958	166 bp downstream
Tssr99959	transcription start site region 99959	258 bp downstream